Browse Gene Sets

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By collection:

[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 299 gene sets)
  • C2 (curated gene sets, 6226 gene sets)
    • CGP (chemical and genetic perturbations, 3358 gene sets)
    • CP (canonical pathways, 2868 gene sets)
  • C3 (regulatory target gene sets, 3556 gene sets)
    • MIR (microRNA targets, 2598 gene sets)
    • TFT (all transcription factor targets, 958 gene sets)
      • TFT:GTRD (GTRD transcription factor targets, 348 gene sets)
      • TFT:TFT_Legacy (legacy transcription factor targets, 610 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (ontology gene sets, 14765 gene sets)
    • GO (Gene Ontology, 10271 gene sets)
      • GO:BP (GO biological process, 7573 gene sets)
      • GO:CC (GO cellular component, 1001 gene sets)
      • GO:MF (GO molecular function, 1697 gene sets)
    • HPO (Human Phenotye Ontology, 4494 gene sets)
  • C6 (oncogenic signature gene sets, 189 gene sets)
  • C7 (immunologic signature gene sets, 4872 gene sets)
  • C8 (cell type signature gene sets, 302 gene sets)

Gene sets starting with A

Click on a gene set name to view its gene set page.

AAACCAC_MIR140
AAAGACA_MIR511
AAAGGAT_MIR501
AAAGGGA_MIR204_MIR211
AAANWWTGC_UNKNOWN
AAAYRNCTG_UNKNOWN
AAAYWAACM_HFH4_01
AACATTC_MIR4093P
AACGGTT_MIR451
AACTGAC_MIR223
AACTGGA_MIR145
AACTTT_UNKNOWN
AACWWCAANK_UNKNOWN
AACYNNNNTTCCS_UNKNOWN
AAGCAAT_MIR137
AAGCACA_MIR218
AAGCACT_MIR520F
AAGCCAT_MIR135A_MIR135B
AAGGGAT_MIR188
AAGTCCA_MIR422B_MIR422A
AAGWWRNYGGC_UNKNOWN
AATGGAG_MIR136
AATGTGA_MIR23A_MIR23B
ABBUD_LIF_SIGNALING_1_DN
ABBUD_LIF_SIGNALING_1_UP
ABBUD_LIF_SIGNALING_2_DN
ABBUD_LIF_SIGNALING_2_UP
ABDELMOHSEN_ELAVL4_TARGETS
ABDULRAHMAN_KIDNEY_CANCER_VHL_DN
ABE_INNER_EAR
ABE_VEGFA_TARGETS
ABE_VEGFA_TARGETS_2HR
ABE_VEGFA_TARGETS_30MIN
ABRAHAM_ALPC_VS_MULTIPLE_MYELOMA_DN
ABRAHAM_ALPC_VS_MULTIPLE_MYELOMA_UP
ABRAMSON_INTERACT_WITH_AIRE
ACAACCT_MIR453
ACAACTT_MIR382
ACACTAC_MIR1423P
ACACTCC_MIR122A
ACACTGG_MIR199A_MIR199B
ACAGGGT_MIR10A_MIR10B
ACATATC_MIR190
ACATTCC_MIR1_MIR206
ACAWNRNSRCGG_UNKNOWN
ACAWYAAAG_UNKNOWN
ACCAAAG_MIR9
ACCAATC_MIR509
ACCATTT_MIR522
ACCGAGC_MIR423
ACCTGTTG_UNKNOWN
ACEVEDO_FGFR1_TARGETS_IN_PROSTATE_C
ANCER_MODEL_DN

ACEVEDO_FGFR1_TARGETS_IN_PROSTATE_C
ANCER_MODEL_UP

ACEVEDO_LIVER_CANCER_DN
ACEVEDO_LIVER_CANCER_UP
ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_
DN

ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_
UP

ACEVEDO_LIVER_CANCER_WITH_H3K9ME3_D
N

ACEVEDO_LIVER_CANCER_WITH_H3K9ME3_U
P

ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJAC
ENT_TISSUE_DN

ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJAC
ENT_TISSUE_UP

ACEVEDO_METHYLATED_IN_LIVER_CANCER_
DN

ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_L
IVER_TUMOR_DN

ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_L
IVER_TUMOR_UP

ACGCACA_MIR210
ACOSTA_PROLIFERATION_INDEPENDENT_MY
C_TARGETS_DN

ACOSTA_PROLIFERATION_INDEPENDENT_MY
C_TARGETS_UP

ACTACCT_MIR196A_MIR196B
ACTAYRNNNCCCR_UNKNOWN
ACTGAAA_MIR30A3P_MIR30E3P
ACTGCAG_MIR173P
ACTGCCT_MIR34B
ACTGTAG_MIR139
ACTGTGA_MIR27A_MIR27B
ACTIN_CYTOSKELETON_ORGANIZATION_AND
_BIOGENESIS

ACTIN_FILAMENT_BUNDLE_FORMATION
ACTIN_FILAMENT_POLYMERIZATION
ACTTTAT_MIR1425P
ACTWSNACTNY_UNKNOWN
ADAPTIVE_IMMUNE_RESPONSE
ADCYAP1_TARGET_GENES
ADDYA_ERYTHROID_DIFFERENTIATION_BY_
HEMIN

AFFAR_YY1_TARGETS_DN
AFFAR_YY1_TARGETS_UP
AFP1_Q6
AGARWAL_AKT_PATHWAY_TARGETS
AGCACTT_MIR93_MIR302A_MIR302B_MIR30
2C_MIR302D_MIR372_MIR373_MIR520E_MI
R520A_MIR526B_MIR520B_MIR520C_MIR52
0D

AGCATTA_MIR155
AGCGCAG_MIR191
AGCGCTT_MIR518F_MIR518E_MIR518A
AGCTCCT_MIR28
AGCYRWTTC_UNKNOWN
AGGAAGC_MIR5163P
AGGAGTG_MIR483
AGGCACT_MIR5153P
AGGGCAG_MIR18A
AGGGCCA_MIR328
AGGTGCA_MIR500
AGTCAGC_MIR345
AGTCTAG_MIR151
AGTCTTA_MIR499
AGTGCGT_MIR521
AGTTCTC_MIR146A_MIR146B
AGUIRRE_PANCREATIC_CANCER_COPY_NUMB
ER_DN

AGUIRRE_PANCREATIC_CANCER_COPY_NUMB
ER_UP

AHR_01
AHR_Q5
AHRARNT_01
AHRARNT_02
AIGNER_ZEB1_TARGETS
AIYAR_COBRA1_TARGETS_DN
AIYAR_COBRA1_TARGETS_UP
AIZARANI_LIVER_C10_MVECS_1
AIZARANI_LIVER_C11_HEPATOCYTES_1
AIZARANI_LIVER_C12_NK_NKT_CELLS_4
AIZARANI_LIVER_C13_LSECS_2
AIZARANI_LIVER_C14_HEPATOCYTES_2
AIZARANI_LIVER_C17_HEPATOCYTES_3
AIZARANI_LIVER_C18_NK_NKT_CELLS_5
AIZARANI_LIVER_C1_NK_NKT_CELLS_1
AIZARANI_LIVER_C20_LSECS_3
AIZARANI_LIVER_C21_STELLATE_CELLS_1
AIZARANI_LIVER_C22_RESIDENT_B_CELLS
_2

AIZARANI_LIVER_C23_KUPFFER_CELLS_3
AIZARANI_LIVER_C24_EPCAM_POS_BILE_D
UCT_CELLS_3

AIZARANI_LIVER_C25_KUPFFER_CELLS_4
AIZARANI_LIVER_C28_NK_NKT_CELLS_6
AIZARANI_LIVER_C29_MVECS_2
AIZARANI_LIVER_C2_KUPFFER_CELLS_1
AIZARANI_LIVER_C30_HEPATOCYTES_4
AIZARANI_LIVER_C31_KUPFFER_CELLS_5
AIZARANI_LIVER_C32_MVECS_3
AIZARANI_LIVER_C33_STELLATE_CELLS_2
AIZARANI_LIVER_C34_MHC_II_POS_B_CEL
LS

AIZARANI_LIVER_C38_RESIDENT_B_CELLS
_3

AIZARANI_LIVER_C39_EPCAM_POS_BILE_D
UCT_CELLS_4

AIZARANI_LIVER_C3_NK_NKT_CELLS_2
AIZARANI_LIVER_C4_EPCAM_POS_BILE_DU
CT_CELLS_1

AIZARANI_LIVER_C5_NK_NKT_CELLS_3
AIZARANI_LIVER_C6_KUPFFER_CELLS_2
AIZARANI_LIVER_C7_EPCAM_POS_BILE_DU
CT_CELLS_2

AIZARANI_LIVER_C8_RESIDENT_B_CELLS_
1

AIZARANI_LIVER_C9_LSECS_1
AKL_HTLV1_INFECTION_DN
AKL_HTLV1_INFECTION_UP
AKT_UP.V1_DN
AKT_UP.V1_UP
AKT_UP_MTOR_DN.V1_DN
AKT_UP_MTOR_DN.V1_UP
ALCALA_APOPTOSIS
ALCALAY_AML_BY_NPM1_LOCALIZATION_DN
ALCALAY_AML_BY_NPM1_LOCALIZATION_UP
ALFANO_MYC_TARGETS
ALK_DN.V1_DN
ALK_DN.V1_UP
ALKBH3_TARGET_GENES
ALONSO_METASTASIS_DN
ALONSO_METASTASIS_EMT_DN
ALONSO_METASTASIS_EMT_UP
ALONSO_METASTASIS_NEURAL_UP
ALONSO_METASTASIS_UP
ALPHACP1_01
ALTEMEIER_RESPONSE_TO_LPS_WITH_MECH
ANICAL_VENTILATION

ALX4_01
ALX4_TARGET_GENES
AMBROSINI_FLAVOPIRIDOL_TREATMENT_TP
53

AMEF2_Q6
AMINO_ACID_AND_DERIVATIVE_METABOLIC
_PROCESS

AMIT_DELAYED_EARLY_GENES
AMIT_EGF_RESPONSE_120_HELA
AMIT_EGF_RESPONSE_120_MCF10A
AMIT_EGF_RESPONSE_20_HELA
AMIT_EGF_RESPONSE_20_MCF10A
AMIT_EGF_RESPONSE_240_HELA
AMIT_EGF_RESPONSE_240_MCF10A
AMIT_EGF_RESPONSE_40_HELA
AMIT_EGF_RESPONSE_40_MCF10A
AMIT_EGF_RESPONSE_480_HELA
AMIT_EGF_RESPONSE_480_MCF10A
AMIT_EGF_RESPONSE_60_HELA
AMIT_EGF_RESPONSE_60_MCF10A
AMIT_SERUM_RESPONSE_120_MCF10A
AMIT_SERUM_RESPONSE_20_MCF10A
AMIT_SERUM_RESPONSE_240_MCF10A
AMIT_SERUM_RESPONSE_40_MCF10A
AMIT_SERUM_RESPONSE_480_MCF10A
AMIT_SERUM_RESPONSE_60_MCF10A
AML1_01
AML1_Q6
AML_Q6
AMUNDSON_DNA_DAMAGE_RESPONSE_TP53
AMUNDSON_GAMMA_RADIATION_RESPONSE
AMUNDSON_GENOTOXIC_SIGNATURE
AMUNDSON_RESPONSE_TO_ARSENITE
ANASTASSIOU_MULTICANCER_INVASIVENES
S_SIGNATURE

ANATOMICAL_STRUCTURE_DEVELOPMENT
ANATOMICAL_STRUCTURE_MORPHOGENESIS
ANDERSEN_CHOLANGIOCARCINOMA_CLASS1
ANDERSEN_CHOLANGIOCARCINOMA_CLASS2
ANDERSEN_LIVER_CANCER_KRT19_DN
ANDERSEN_LIVER_CANCER_KRT19_UP
ANGIOGENESIS
AP1_01
AP1_C
AP1_Q2
AP1_Q2_01
AP1_Q4
AP1_Q4_01
AP1_Q6
AP1_Q6_01
AP1FJ_Q2
AP2_Q3
AP2_Q6
AP2_Q6_01
AP2ALPHA_01
AP2GAMMA_01
AP2REP_01
AP3_Q6
AP4_01
AP4_Q5
AP4_Q6
AP4_Q6_01
APOPTOTIC_NUCLEAR_CHANGES
APOPTOTIC_PROGRAM
APPEL_IMATINIB_RESPONSE
APPIERTO_RESPONSE_TO_FENRETINIDE_DN
APPIERTO_RESPONSE_TO_FENRETINIDE_UP
APRELIKOVA_BRCA1_TARGETS
AR_01
AR_02
AR_03
AR_Q2
AR_Q6
AREB6_01
AREB6_02
AREB6_03
AREB6_04
ARGGGTTAA_UNKNOWN
ARHGAP35_TARGET_GENES
ARID5B_TARGET_GENES
ARNT2_TARGET_GENES
ARNT_01
ARNT_02
AROMATIC_COMPOUND_METABOLIC_PROCESS
ARP1_01
ASGHARZADEH_NEUROBLASTOMA_POOR_SURV
IVAL_DN

ASH1L_TARGET_GENES
ASTIER_INTEGRIN_SIGNALING
ASTON_MAJOR_DEPRESSIVE_DISORDER_DN
ASTON_MAJOR_DEPRESSIVE_DISORDER_UP
ATAACCT_MIR154
ATAAGCT_MIR21
ATACCTC_MIR202
ATACTGT_MIR144
ATAGGAA_MIR202
ATATGCA_MIR448
ATCATGA_MIR433
ATCMNTCCGY_UNKNOWN
ATCTTGC_MIR31
ATF1_Q6
ATF2_S_UP.V1_DN
ATF2_S_UP.V1_UP
ATF2_UP.V1_DN
ATF2_UP.V1_UP
ATF3_Q6
ATF4_Q2
ATF5_TARGET_GENES
ATF6_01
ATF6_TARGET_GENES
ATF_01
ATF_B
ATGAAGG_MIR205
ATGCACG_MIR517B
ATGCAGT_MIR217
ATGCTGC_MIR103_MIR107
ATGCTGG_MIR338
ATGGYGGA_UNKNOWN
ATGTACA_MIR493
ATGTAGC_MIR221_MIR222
ATGTCAC_MIR489
ATGTTAA_MIR302C
ATGTTTC_MIR494
ATM_DN.V1_DN
ATM_DN.V1_UP
ATM_TARGET_GENES
ATTACAT_MIR3803P
ATTCTTT_MIR186
AUJLA_IL22_AND_IL17A_SIGNALING
AUNG_GASTRIC_CANCER
AXON_GUIDANCE
AXONOGENESIS
AZARE_NEOPLASTIC_TRANSFORMATION_BY_
STAT3_DN

AZARE_NEOPLASTIC_TRANSFORMATION_BY_
STAT3_UP

AZARE_STAT3_TARGETS