Browse Gene Sets

Gene set name:

By first letter:

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By collection:

[about the MSigDB collections]

• H (hallmark gene sets, 50 gene sets)
• C1 (positional gene sets, 299 gene sets)
  • by chromosome: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT
• C2 (curated gene sets, 6366 gene sets)
  • CGP (chemical and genetic perturbations, 3384 gene sets)
  • CP (canonical pathways, 2982 gene sets)
    • CP:BIOCARTA (BioCarta gene sets, 292 gene sets)
    • CP:KEGG (KEGG gene sets, 186 gene sets)
    • CP:PID (PID gene sets, 196 gene sets)
    • CP:REACTOME (Reactome gene sets, 1615 gene sets)
    • CP:WIKIPATHWAYS (WikiPathways gene sets, 664 gene sets)
• C3 (regulatory target gene sets, 3726 gene sets)
  • MIR (microRNA targets, 2598 gene sets)
    • MIR:MIR_Legacy (legacy microRNA targets, 221 gene sets)
    • MIR:MIRDB (MIRDB microRNA targets, 2377 gene sets)
  • TFT (all transcription factor targets, 1128 gene sets)
    • TFT:GTRD (GTRD transcription factor targets, 518 gene sets)
    • TFT:TFT_Legacy (legacy transcription factor targets, 610 gene sets)
• C4 (computational gene sets, 858 gene sets)
  • CGN (cancer gene neighborhoods, 427 gene sets)
  • CM (cancer modules, 431 gene sets)
• C5 (ontology gene sets, 15473 gene sets)
  • GO (Gene Ontology, 10402 gene sets)
    • GO:BP (GO biological process, 7658 gene sets)
    • GO:CC (GO cellular component, 1006 gene sets)
    • GO:MF (GO molecular function, 1738 gene sets)
  • HPO (Human Phenotye Ontology, 5071 gene sets)
• C6 (oncogenic signature gene sets, 189 gene sets)
• C7 (immunologic signature gene sets, 5219 gene sets)
  • IMMUNESIGDB (ImmuneSigDB gene sets, 4872 gene sets)
  • VAX (vaccine response gene sets, 347 gene sets)
• C8 (cell type signature gene sets, 700 gene sets)