Introduction
Getting Started
Installing and Starting GSEA
Getting Help
Preparing Data Files for GSEA
Consistent Feature Identifiers Across Data Files
Expression Datasets
Phenotype Labels
Gene Sets
Chip Annotations
cDNA Microarray Data
Loading Data
Running Analyses
Interpreting GSEA Results
GSEA Statistics
GSEA Report
Interpreting Leading Edge Analysis Results
Running GSEA from the Command Line
Quick Reference
Menu Bar
GSEA Main Window
Load Data Page
Run GSEA Page
Metrics for Ranking Genes
Leading Edge Analysis Page
Chip2Chip Page
Analysis History Page
GSEAPreranked Page
CollapseDataset Page
Preferences Window
MSigDB XML Browser
Documentation Update History