Getting Started

Installing and Starting GSEA

Getting Help

Preparing Data Files for GSEA

Consistent Feature Identifiers Across Data Files

Expression Datasets

Phenotype Labels

Gene Sets

Chip Annotations

cDNA Microarray Data

Loading Data

Running Analyses

Interpreting GSEA Results

GSEA Statistics

GSEA Report

Interpreting Leading Edge Analysis Results

Running GSEA from the Command Line

Quick Reference

Menu Bar

GSEA Main Window

Load Data Page

Run GSEA Page

Metrics for Ranking Genes

Leading Edge Analysis Page

Chip2Chip Page

Analysis History Page

GSEAPreranked Page

CollapseDataset Page

Preferences Window

MSigDB XML Browser

Documentation Update History