Human Gene Set: PERCHARD_ALSPAC_PREDICTIVE_PREHYPERTENSION_COMBINED


Standard name PERCHARD_ALSPAC_PREDICTIVE_PREHYPERTENSION_COMBINED
Systematic name M50231
Brief description 42-gene hypergraph cluster was highly predictive of prehypertension (AUC 0.984, error rate 5.4%). In BabyGRO, 20 of these genes (AGRN,BSG,CABLES1,EDN1,ELL2,FPR2,FUBP3,IMPDH2,MRPL2,MVP,PEX26,PPP1R13L,PRKAR1A,RAB3IL1,RHOF,SERBP1,SLC25A14,THAP9,ZMYND8,ZNF496) accurately predicted higher systolic blood pressure (AUC 0.971, error rate 3.6%)
Full description or abstract BACKGROUND Suboptimal fetal growth (SFG), being born small for gestational age (SGA), and catch-up (CU) growth are, individually and together, linked to cardiometabolic risks. However, not all develop adverse outcomes. This study aimed to validate a transcriptomic signature to identify individuals at greatest cardiometabolic risk.METHODSUsing National Heart, Lung and Blood Institute (NHLBI) criteria to define cardiometabolic risk, healthy and prehypertensive 17-year-olds were identified in the Avon Longitudinal Study of Parents and Children (ALSPAC) (UK) childhood cohort. Epigenomic and transcriptomic differences were analyzed. A hypergraph identified functionally related genes, which were used in random forest classification to predict prehypertensive phenotypes. The BabyGRO (UK) cohort included 80 children aged 3-7 years, born at term following pregnancies with SFG risks. Anthropometric and cardiometabolic markers and transcriptomic profiles were collected, fetal and childhood weight trajectories and their relationship to cardiometabolic markers were assessed, and transcriptome was used for prediction.RESULTSIndividuals with CU-SGA in ALSPAC were 1.6 times more likely than all others to be prehypertensive at 17 years (P < 1 × 10-5). A 42-gene hypergraph cluster was highly predictive of prehypertension (AUC 0.984, error rate 5.4%). In BabyGRO, 20 of these genes accurately predicted higher systolic blood pressure (AUC 0.971, error rate 3.6%). This transcriptomic signature could help identify children with adverse pre- and postnatal growth who may develop prehypertension.CONCLUSIONA blood transcriptomic signature exists in childhood which distinguishes those at risk of adult cardiometabolic disease among children with adverse pre- and postnatal growth.TRIAL REGISTRATIONRegional ethics committee reference 17/NW/0153, IRAS project ID 187679.FUNDINGCentre grant to the Maternal and Fetal Health Research Centre by Tommy's The Pregnancy and Baby Charity, Child Growth Foundation, European Research Council funding as part of the Health and Environment-wide Associations based on Large Population Surveys (HEALS) study.
Collection C2: Curated
      CGP: Chemical and Genetic Perturbations
Source publication Pubmed 41355796   Authors: Perchard R,Garner T,Murray PG,Roslan A,Higgins LE,Johnstone ED,Stevens A,Clayton PE
Exact source Supplemental table 1 and Supplemental table 2 combined gene list
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External links https://insight.jci.org/articles/view/192837
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Source species Homo sapiens
Contributed by Anthony Castanza (MSigDB Team)
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Version history 2026.1.Hs: First Introduced.


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