STANDARD_NAME GSE18893_CTRL_VS_TNF_TREATED_TCONV_2H_UP SYSTEMATIC_NAME M7295 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE18893_CTRL_VS_TNF_TREATED_TCONV_2H_UP NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes up-regulated in T conv cells (2h): medium versus TNF [GeneID=7124]. DESCRIPTION_FULL Here we show that tumor necrosis factor (TNF) induced in human T-regulatory cells (Treg), as compared to conventional T cells (Tcon), a transcription program highly enriched for typical NF-κB target genes, such as: the cytokines LTA and TNF; the TNF-receptor super family members FAS, 4-1BB and OX-40; various anti-apoptotic genes; and other important immune-response genes. As an initial approach to examine the cellular program induced by TNF in Tregs versus Tcon cells, we employed microarray gene expression analysis at 2 and 24 hrs following TNF treatment. PMID 20181891 GEOID GSE18893 AUTHORS Nagar M,Jacob-Hirsch J,Vernitsky H,Berkun Y,Ben-Horin S,Amariglio N,Bank I,Kloog Y,Rechavi G,Goldstein I CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE18893_1275_200_UP FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS ACTN1,ACTR3,ACTRT1,ACVRL1,ADAM10,ADK,ADPRH,ALS2CL,ANKHD1,ANKS1A,APH1B,APIP,ARAP3,ARHGAP1,ARPC3,ASNSD1,ASPRV1,ATAD2B,ATG16L2,ATP2B3,ATP6V1E1,ATRN,BIN3,BLCAP,BRD7,C12orf48,C15orf48,C16orf48,C16orf54,C16orf93,C17orf71,C1D,C20orf196,C2orf68,C4orf52,C5orf32,C7orf31,C7orf55,C9orf82,CAB39L,CAPZA3,CAPZB,CCDC111,CCDC56,CD86,CENPJ,CHAC2,COPG2,COQ4,CYBA,DAZAP2,DBH,DDX31,DEF6,DEPDC1B,DFNA5,DHDDS,DHRS11,DMPK,DMWD,DNMBP,DSCR3,DYNLT1,ECH1,EFHD2,EIF2AK1,EIF4A1,ETHE1,EXOC3,FAM71B,G3BP2,GALC,GALNT3,GLYR1,GMIP,GNPDA1,GOT2,GPATCH8,GRHPR,GYS1,HAAO,HDAC10,HLA-B,HMGB2,HSD11B1,IFITM3,IGSF11,IRAK3,ITGA2,ITK,JDP2,KATNA1,KCNAB2,KIAA0174,KIF21B,KIF5B,KPNA4,KRT33B,KRT76,LAMTOR3,LASP1,LCN12,LDHC,LPGAT1,LRRC6,LRRC67,MAP2K4,MAPK1IP1L,MED30,MED31,MLX,MOCOS,MON1B,MORC3,MOSPD3,MPDU1,MRPS11,MTHFS,MYO1F,NBEAL2,NDFIP1,NIPSNAP3A,NKIRAS2,NPLOC4,NRBP1,NSUN4,ORMDL1,OSBPL2,PADI4,PAIP1,PAQR5,PCDHGC4,PDF,PDZD8,PENK,PLCB3,PLCL2,PLXNC1,POLR2J,POMP,PPP6C,PQLC1,PSMB8,PSMB9,PSMD10,PTP4A3,RAB11A,RAB5A,RAP2C,RARS,RASA2,RGS19,RHOH,RINL,RIOK1,RNF181,RUFY1,SAMD9L,SEC22B,SEMA7A,SH3BGRL3,SLC16A3,SLC27A4,SLC5A11,SNRPC,SPG21,SPP1,SRP19,ST3GAL2,ST3GAL5,STAG2,STRADB,STX19,SYNE1,SYNE2,TBC1D8,TBP,TFDP1,TGDS,THOC6,TINAGL1,TINF2,TMCO3,TMCO7,TMEM179B,TMEM216,TMEM52,TNPO1,TPD52L2,TRABD,TRIOBP,UBA1,UBN1,UGDH,VPS26A,XKR8,YKT6,ZNF142,ZNF143,ZNF830 GENE_SYMBOLS ACTN1,ACTR3,ACTRT1,ACVRL1,ADAM10,ADK,ADPRH,ALS2CL,ANKHD1,ANKS1A,APH1B,APIP,ARAP3,ARHGAP1,ARPC3,ASNSD1,ASPRV1,ATAD2B,ATG16L2,ATP2B3,ATP6V1E1,ATRN,BIN3,BLCAP,BRD7,PARPBP,C15orf48,ENKD1,C16orf54,CFAP119,SMG8,C1D,SHLD1,C2orf68,SMIM20,CYSTM1,C7orf31,FMC1,CAAP1,CAB39L,CAPZA3,CAPZB,PRIMPOL,COA3,CD86,CENPJ,CHAC2,COPG2,COQ4,CYBA,DAZAP2,DBH,DDX31,DEF6,DEPDC1B,GSDME,DHDDS,DHRS11,DMPK,DMWD,DNMBP,VPS26C,DYNLT1,ECH1,EFHD2,EIF2AK1,EIF4A1,ETHE1,EXOC3,GARIN3,G3BP2,GALC,GALNT3,GLYR1,GMIP,GNPDA1,GOT2,GPATCH8,GRHPR,GYS1,HAAO,HDAC10,HLA-B,HMGB2,HSD11B1,IFITM3,IGSF11,IRAK3,ITGA2,ITK,JDP2,KATNA1,KCNAB2,IST1,KIF21B,KIF5B,KPNA4,KRT33B,KRT76,LAMTOR3,LASP1,LCN12,LDHC,LPGAT1,DNAAF11,PPP1R42,MAP2K4,MAPK1IP1L,MED30,MED31,MLX,MOCOS,MON1B,MORC3,MOSPD3,MPDU1,MRPS11,MTHFS,MYO1F,NBEAL2,NDFIP1,NIPSNAP3A,NKIRAS2,NPLOC4,NRBP1,NSUN4,ORMDL1,OSBPL2,PADI4,PAIP1,PAQR5,PCDHGC4,PDF,PDZD8,PENK,PLCB3,PLCL2,PLXNC1,POLR2J,POMP,PPP6C,SLC66A2,PSMB8,PSMB9,PSMD10,PTP4A3,RAB11A,RAB5A,RAP2C,RARS1,RASA2,RGS19,RHOH,RINL,RIOK1,RNF181,RUFY1,SAMD9L,SEC22B,SEMA7A,SH3BGRL3,SLC16A3,SLC27A4,SLC5A11,SNRPC,SPG21,SPP1,SRP19,ST3GAL2,ST3GAL5,STAG2,STRADB,STX19,SYNE1,SYNE2,TBC1D8,TBP,TFDP1,TGDS,THOC6,TINAGL1,TINF2,TMCO3,TANGO6,TMEM179B,TMEM216,TMEM52,TNPO1,TPD52L2,TRABD,TRIOBP,UBA1,UBN1,UGDH,VPS26A,XKR8,YKT6,ZNF142,ZNF143,ZNF830 FOUNDER_NAMES