STANDARD_NAME GSE22140_GERMFREE_VS_SPF_MOUSE_CD4_TCELL_DN SYSTEMATIC_NAME M7644 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE22140_GERMFREE_VS_SPF_MOUSE_CD4_TCELL_DN NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes down-regulated in healthy CD4 [GeneID=920] T cells: germ free versus specific pathogen free. DESCRIPTION_FULL A general defect of GF K/BxN T cell proliferation response toward antigen motivated us to look for the impairment in GF K/BxN T cells that might leads to the low Ab production and reduced disease phenotype seen in GF K/BxN mice. To find the difference between GF and SPF K/BxN T cells in a broad and non-biased fashion, we performed gene-expression profiling of these cells using microarrays. PMID 20620945 GEOID GSE22140 AUTHORS Wu HJ,Ivanov II,Darce J,Hattori K,Shima T,Umesaki Y,Littman DR,Benoist C,Mathis D CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE22140_2813_200_DN FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS ABHD14A,ACP5,ADA,ADAM19,ADM,AHNAK,AKAP1,AKR1C3,ALCAM,ALOX5AP,ANPEP,ANXA2,AP1B1,AP2M1,APBB3,APLP2,APOBEC3C,ARRB2,BCAP31,BID,BIN1,BLMH,BLVRB,C17orf91,CALM1,CAMSAP1,CAPN2,CCL3,CCL4,CCL7,CCT2,CD163,CD180,CD300C,CD59,CD99,CDC37,CLEC11A,CLIC1,CRIP1,CSF1R,CTSK,CTSL1,CXCL3,DAB2,DCTN5,DDIT4,DGKA,DLST,DNASE1L1,DNMBP,DNTTIP2,DOCK10,DUSP2,EIF2S1,EIF3B,EIF4A1,ELL2,EMD,EMP1,EMP3,ENG,EREG,ERGIC3,EWSR1,FABP5,FAIM3,FARP1,FERMT2,FLRT2,FUBP1,FUS,GGA2,GNA15,GNAQ,GOSR2,HEG1,HMGA1,HNRNPA3,HOMER3,HPCAL1,HS3ST1,HSP90B1,HSPA1A,HTR2B,HTRA1,ID3,IER3,IFI44,IFIT1,IFIT2,IFIT3,IFITM2,IL1B,IL7R,INPP1,KANK1,LAIR1,LGALS3,LGMN,LMNA,LTBP2,MAP4K4,MAPKAPK2,MED20,MGST3,MPRIP,MRC1,MSC,MX1,MYO7A,NCOR2,NFKB1,NID1,NISCH,NOTCH3,NOVA1,NQO1,OASL,OLFML2B,P2RX4,PDIA6,PDXK,PGCP,PHLDB1,PI4K2A,PIK3R1,PLEC,PLEKHO2,PLIN2,PLP2,PLTP,PMP22,PNP,PPIF,PPP1CA,PPP1R15A,PRKRIR,PRPF4,PTOV1,PTX3,RAB35,RAB5C,RAD51,RGS1,RNASE1,RPN1,RPN2,RPS6KA2,S100A4,SAR1A,SDS,SEC62,SEPP1,SERPINB2,SERPINB8,SERPINE1,SERTAD2,SFXN3,SGSH,SGTA,SH3BP5,SH3GL1,SLC16A3,SLC16A7,SLC36A1,SLC3A2,SLC7A11,SLC7A8,SNX2,SQSTM1,SRSF2,STAB1,STK10,STX2,TCEB1,TECR,TGFBI,THBS1,TIMP1,TIMP2,TMEM184B,TNFRSF11A,TNFRSF1B,TNFSF14,TNFSF8,TOB2,TP53BP2,TPD52L2,TRAF1,TUBB2A,TUBB4,TXNRD1,UBE2H,VASP,VDAC1,VSIG4,XBP1,YWHAH,YWHAZ GENE_SYMBOLS ABHD14A,ACP5,ADA,ADAM19,ADM,AHNAK,AKAP1,AKR1C3,ALCAM,ALOX5AP,ANPEP,ANXA2,AP1B1,AP2M1,APBB3,APLP2,APOBEC3C,ARRB2,BCAP31,BID,BIN1,BLMH,BLVRB,MIR22HG,CALM1,CAMSAP1,CAPN2,CCL3,CCL4,CCL7,CCT2,CD163,CD180,CD300C,CD59,CD99,CDC37,CLEC11A,CLIC1,CRIP1,CSF1R,CTSK,CTSL,CXCL3,DAB2,DCTN5,DDIT4,DGKA,DLST,DNASE1L1,DNMBP,DNTTIP2,DOCK10,DUSP2,EIF2S1,EIF3B,EIF4A1,ELL2,EMD,EMP1,EMP3,ENG,EREG,ERGIC3,EWSR1,FABP5,FCMR,FARP1,FERMT2,FLRT2,FUBP1,FUS,GGA2,GNA15,GNAQ,GOSR2,HEG1,HMGA1,HNRNPA3,HOMER3,HPCAL1,HS3ST1,HSP90B1,HSPA1A,HTR2B,HTRA1,ID3,IER3,IFI44,IFIT1,IFIT2,IFIT3,IFITM2,IL1B,IL7R,INPP1,KANK1,LAIR1,LGALS3,LGMN,LMNA,LTBP2,MAP4K4,MAPKAPK2,MED20,MGST3,MPRIP,MRC1,MSC,MX1,MYO7A,NCOR2,NFKB1,NID1,NISCH,NOTCH3,NOVA1,NQO1,OASL,OLFML2B,P2RX4,PDIA6,PDXK,CPQ,PHLDB1,PI4K2A,PIK3R1,PLEC,PLEKHO2,PLIN2,PLP2,PLTP,PMP22,PNP,PPIF,PPP1CA,PPP1R15A,THAP12,PRPF4,PTOV1,PTX3,RAB35,RAB5C,RAD51,RGS1,RNASE1,RPN1,RPN2,RPS6KA2,S100A4,SAR1A,SDS,SEC62,SELENOP,SERPINB2,SERPINB8,SERPINE1,SERTAD2,SFXN3,SGSH,SGTA,SH3BP5,SH3GL1,SLC16A3,SLC16A7,SLC36A1,SLC3A2,SLC7A11,SLC7A8,SNX2,SQSTM1,SRSF2,STAB1,STK10,STX2,ELOC,TECR,TGFBI,THBS1,TIMP1,TIMP2,TMEM184B,TNFRSF11A,TNFRSF1B,TNFSF14,TNFSF8,TOB2,TP53BP2,TPD52L2,TRAF1,TUBB2A,TUBB4A,TXNRD1,UBE2H,VASP,VDAC1,VSIG4,XBP1,YWHAH,YWHAZ FOUNDER_NAMES