STANDARD_NAME SENESE_HDAC1_AND_HDAC2_TARGETS_UP SYSTEMATIC_NAME M18938 COLLECTION C2:CGP MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/SENESE_HDAC1_AND_HDAC2_TARGETS_UP NAMESPACE AFFY_HG_U133 DESCRIPTION_BRIEF Genes up-regulated in U2OS cells (osteosarcoma) upon knockdown of both HDAC1 and HDAC2 [GeneID=3065;3066] by RNAi. DESCRIPTION_FULL Posttranslational modifications of core histones are central to the regulation of gene expression. Histone deacetylases (HDACs) repress transcription by deacetylating histones, and class I HDACs have a crucial role in mouse, Xenopus laevis, zebra fish, and Caenorhabditis elegans development. The role of individual class I HDACs in tumor cell proliferation was investigated using RNA interference-mediated protein knockdown. We show here that in the absence of HDAC1 cells can arrest either at the G(1) phase of the cell cycle or at the G(2)/M transition, resulting in the loss of mitotic cells, cell growth inhibition, and an increase in the percentage of apoptotic cells. On the contrary, HDAC2 knockdown showed no effect on cell proliferation unless we concurrently knocked down HDAC1. Using gene expression profiling analysis, we found that inactivation of HDAC1 affected the transcription of specific target genes involved in proliferation and apoptosis. Furthermore, HDAC2 downregulation did not cause significant changes compared to control cells, while inactivation of HDAC1, HDAC1 plus HDAC2, or HDAC3 resulted in more distinct clusters. Loss of these HDACs might impair cell cycle progression by affecting not only the transcription of specific target genes but also other biological processes. Our data support the idea that a drug targeting specific HDACs could be highly beneficial in the treatment of cancer. PMID 17470557 GEOID AUTHORS Senese S,Zaragoza K,Minardi S,Muradore I,Ronzoni S,Passafaro A,Bernard L,Draetta GF,Alcalay M,Seiser C,Chiocca S CONTRIBUTOR Leona Saunders CONTRIBUTOR_ORG MSigDB Team EXACT_SOURCE Table 1S: HDAC1+2=U FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS 1552580_at,1552717_s_at,1552727_s_at,1554029_a_at,1554311_a_at,1554327_a_at,1554397_s_at,1554885_a_at,1555167_s_at,1555370_a_at,1555536_at,1555538_s_at,1555830_s_at,1556037_s_at,1556114_a_at,1556395_at,1556704_s_at,1557100_s_at,1557389_at,1557918_s_at,1557984_s_at,1558214_s_at,1558733_at,1559954_s_at,1560031_at,1561042_at,1561254_at,1561691_at,1562048_at,1562234_a_at,1562367_at,1562722_at,1564072_at,1569582_at,1570351_at,200796_s_at,200952_s_at,201411_s_at,201438_at,201490_s_at,201656_at,201721_s_at,201858_s_at,201925_s_at,201983_s_at,202036_s_at,202370_s_at,202388_at,202643_s_at,202644_s_at,202833_s_at,202856_s_at,202859_x_at,203029_s_at,203047_at,203068_at,203293_s_at,203300_x_at,203320_at,203567_s_at,203661_s_at,203662_s_at,203889_at,203936_s_at,204224_s_at,204288_s_at,204385_at,204388_s_at,204420_at,204468_s_at,204472_at,204475_at,204491_at,204602_at,204614_at,204864_s_at,204932_at,204933_s_at,205003_at,205100_at,205166_at,205193_at,205289_at,205399_at,205425_at,205461_at,205476_at,205479_s_at,205513_at,205563_at,205681_at,205729_at,205767_at,205874_at,205925_s_at,205945_at,205969_at,206114_at,206127_at,206157_at,206172_at,206432_at,206481_s_at,206569_at,206665_s_at,206788_s_at,206857_s_at,206917_at,206924_at,207334_s_at,207339_s_at,207419_s_at,207517_at,207535_s_at,207630_s_at,207850_at,208565_at,208607_s_at,208624_s_at,208879_x_at,209131_s_at,209136_s_at,209203_s_at,209295_at,209301_at,209552_at,209616_s_at,209652_s_at,209967_s_at,210057_at,210118_s_at,210229_s_at,210405_x_at,210457_x_at,210538_s_at,210663_s_at,211003_x_at,211051_s_at,211363_s_at,211506_s_at,211573_x_at,211668_s_at,211823_s_at,211924_s_at,212009_s_at,212016_s_at,212084_at,212105_s_at,212107_s_at,212142_at,212220_at,212392_s_at,212466_at,212720_at,212741_at,212792_at,213338_at,213446_s_at,213523_at,213524_s_at,213548_s_at,213600_at,213603_s_at,213756_s_at,214007_s_at,214336_s_at,214544_s_at,214613_at,214701_s_at,214974_x_at,215177_s_at,215191_at,215207_x_at,215303_at,215435_at,215489_x_at,215708_s_at,216250_s_at,216915_s_at,216971_s_at,217097_s_at,217388_s_at,217739_s_at,217767_at,217997_at,218000_s_at,218368_s_at,218691_s_at,218748_s_at,218810_at,219060_at,219134_at,219215_s_at,219221_at,219257_s_at,219369_s_at,219557_s_at,219634_at,219836_at,219908_at,219938_s_at,221107_at,221211_s_at,221220_s_at,221523_s_at,221628_s_at,221882_s_at,222385_x_at,222850_s_at,222963_s_at,223217_s_at,223218_s_at,223321_s_at,223438_s_at,223707_at,223723_at,223775_at,224480_s_at,224603_at,224709_s_at,224828_at,224829_at,224999_at,225018_at,225034_at,225516_at,225524_at,225659_at,225728_at,225785_at,226028_at,226218_at,226333_at,226695_at,227198_at,227449_at,227919_at,228343_at,228425_at,228573_at,228802_at,228948_at,228964_at,229194_at,229374_at,229613_at,229713_at,229800_at,229841_at,229850_at,230135_at,230425_at,230778_at,230781_at,230962_at,231169_at,231274_s_at,231721_at,231779_at,231930_at,231947_at,232181_at,232523_at,233126_s_at,233573_s_at,233827_s_at,234219_at,234604_at,234994_at,235088_at,235331_x_at,235661_at,235744_at,236456_at,236517_at,236725_at,236984_at,237094_at,237215_s_at,237411_at,237466_s_at,237732_at,238423_at,238443_at,238542_at,238587_at,238795_at,238811_at,238825_at,238960_s_at,239227_at,239331_at,241342_at,241970_at,242563_at,243611_at,243871_at,36711_at,41469_at GENE_SYMBOLS TRIML2,CEP170,ADAMTS17,SKIC3,SUPT6H,CANT1,UEVLD,PRIM2,NAMPT,CAMTA1,ANTXR2,FAM9B,ESYT2,HHIP,ADPRHL1,,ENSG00000290941,HECTD1,SH3PXD2A-AS1,SLC16A1,RPAP3,CTNNA1,ZBTB38,DDX42,,AGO2,LINC02577,LINC00326,RDUR,NAV3,LINC02915,PRR20A,MYH16,AADACP1,ADAMTS6,MCL1,CCND2,PLEKHB2,COL6A3,PPIF,ITGA6,LAPTM5,SRGN,CD55,EGFR,SFRP1,CBFB,RGS2,TNFAIP3,TNFAIP3,SERPINA1,SLC16A3,CXCL8,PTPRN2,STK10,KLHL21,LMAN1,AP1S2,SH2B3,TRIM38,TMOD1,TMOD1,SCG5,MMP9,GCH1,SORBS2,KYNU,MAOA,FOSL1,TIE1,GEM,MMP1,PDE4D,DKK1,SERPINB2,IL6ST,TNFRSF11B,TNFRSF11B,DOCK4,GFPT2,CAPN5,MAFF,BMP2,DCLK1,HIP1,RAB35,CCL20,PLAU,TCN1,KISS1,BCL2A1,OSMR,EREG,ITPKA,RAB3B,IL6R,AADAC,EPHA4,ELK3,PTX3,IL13RA2,HAS2,LDB2,IL24,BCL2L1,CBFB,FKBP1B,GNA13,IL11,TGFBR2,LTB,RAC2,LAMC2,NFKB2,CREM,CXCL3,MC5R,SAA1,EIF4G1,PRPF6,SNAP23,USP10,BICD2,TNFRSF10B,CA2,PAX8,CES1,PGF,CREM,SMG1,IL1A,CSF2,TNFRSF10B,HMGA1,BIRC3,KYNU,TGM2,EXTL3,MTAP,CXCL8,TGM2,PLAU,PXN,PLAUR,STIP1,PTBP1,TEX261,DHX9,DHX9,MCM4,PSME4,PDE4DIP,SPRED2,PAPOLA,MAOA,DPY19L1,TMEM158,IQGAP1,CCNE1,G0S2,CDV3,SIPA1L3,RAC2,HSF1,TWF1,COPA,SNAP23,GPR3,FN1,CXCL5,ITGA6,,NUS1,DCLK1,,HOMER3,PRIM2,LPXN,PTPN12,PLEC,PHTF2,KYNU,NAMPT,C3,NAP1L1,NAP1L1,TNFRSF12A,PDLIM4,EXOC5,ZC3H12A,NTAQ1,ADGRL4,SLC39A4,ZBTB38,SPHK1,OTUB2,NRIP3,CHST11,ZBED2,DKK2,PSTPIP2,CHRNA9,MAP3K7CL,SCYL2,RRAGD,GLYR1,PGAP6,SEC61A1,DNAJB14,IL1RAPL1,NFKBIZ,NFKBIZ,FGFRL1,PPARA,RPL27A,MELTF,HHIP,GPAT3,SNHG16,CDC42SE2,CPEB4,CPEB4,EGFR,SPIRE1,ST3GAL1,SLC7A2,ANTXR2,SPOPL,SORBS2,REEP3,ROBO4,IL7R,IL6R,PRRX1,AFF3,EPHA4,UCA1,POU2F2,PAX8-AS1,ANTXR2,RBPMS2,EPHA4,PRDM1,PCGF5,EPHA4,NKD1,,DCLK1,,KDSR,HHIP,EPHB1,,LINC01088,DCLK1,,,JAM3,IRAK2,ELMOD1,MYCT1,PPARGC1B,MEGF10,OLAH,WDR6,SUPT16H,LINC02535,,TMEM200A,C4orf46,PCGF5,POU2F2,PPTC7,PTPN5,MEGF10,,ODAPH,TAFA5,TFRC,ADAMTS6,HHIP,PRR9,SYTL3,TFAM,ULBP2,UBASH3B,TASOR2,ATP11B,GCNA,LARP4,,,TMEM65,,,MICAL2,WAKMAR2,MAFF,PI3 FOUNDER_NAMES