STANDARD_NAME STK33_NOMO_UP SYSTEMATIC_NAME M2855 COLLECTION C6 MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/STK33_NOMO_UP NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes up-regulated in NOMO-1 cells (AML) after knockdown of STK33 [Gene ID=65975] by RNAi. DESCRIPTION_FULL NOMO-1 acute myeloid leukemia (AML) cells were stably transduced with different pLKO.1puro lentiviral shRNA vectors targeting STK33 or a nontargeting control shRNA. VSV-G-pseudotyped lentiviral particles were produced by cotransfection of 293T cells with pLKO.1 constructs and the compatible packaging plasmids pMD.G and pCMVR8.91. Virus was harvested 48 and 72 hours after transfection, cells were incubated with lentiviral supernatants for 30 hours, and infected cells were selected with 2ug/ml puromycin. RNA was isolated after 2 days of puromycin selection and isolation of viable cells by density gradient centrifugation, and gene expression was profiled using GeneChip Human Genome U133 Plus 2.0 microarrays (Affymetrix). PMID 19490892 GEOID GSE15151 AUTHORS Scholl C,Fröhling S,Dunn IF,Schinzel AC,Barbie DA,Kim SY,Silver SJ,Tamayo P,Wadlow RC,Ramaswamy S,Döhner K,Bullinger L,Sandy P,Boehm JS,Root DE,Jacks T,Hahn WC,Gilliland DG CONTRIBUTOR Pablo Tamayo CONTRIBUTOR_ORG Broad Institute EXACT_SOURCE control vs KD STK33 in nomo cells; top 300 genes (diff. of means) FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS A2M,AADACL1,ABCA1,ABHD2,ACP5,ACSM3,ACVR1,ADAM28,ADAMDEC1,ANKRD12,AQP9,AREG /// LOC653193,ARID5B,ARL4C,ARL5B,ARNT2,ARRDC3,ASPH,AUH,AXUD1,BCL3,BCL6,BTBD5,BTBD7,BTG2,BTG3,C10orf46,C12orf44,C13orf31,C15orf48,C1QC,C1QDC1,C20orf194,C2orf17,C3AR1,C4orf18,C4orf24,C5AR1,C5orf20,C9orf86,CAB39L,CAMK2D,CC2D1B,CCL20,CCL4,CCRL2 /// LOC642312,CD300C,CD80,CDC37L1,CFL2,CGRRF1,CLEC2B,CLEC7A,CNIH3,COL6A3,COQ10B,CPEB4,CREBL2,CRK,CTTNBP2NL,CXCL1,CXCL2,CXCL3,CXCL6,CXorf39,CYP2E1,DAB2,DAPK1,DDIT4L,DIP13B,DOCK4,DPY19L4,DUSP1,DUSP5,DYX1C1,EFNB2,EGR2,EGR3,ELK4,EMP1,EMR2,EOMES,EPAS1,FABP4,FAM13A1,FAM70A,FBXL13,FBXO32,FCHO2,FCRLB,FLJ20054,FLJ20701,FLJ36031,FNDC3A,FOS,FOXQ1,FTS,GABARAPL1 /// GABARA,GALNT4,GAN,GBP3,GCNT2,GDF15,GFPT1,GJA1,GLIPR1,GNA12,GNG11,GNPDA2,GPATC2,GPNMB,GPR109B,GPR137B,HAVCR2,HBP1,HECTD2,HECW2,HINT3,HIST1H2BC,HIST1H2BG,HMOX1,HNMT,HSD11B1,ICAM1,IER3,IFI16,IGSF4,IL10,IL10RA,IL1A,IL1B,IL1R1,IL1R2,IL6ST,IL7R,IRS1,JAKMIP2,JUN,JUNB,KBTBD8,KCNJ15,KCNJ2,KCTD3,KDELR3,KIAA0232,KIAA0831,KIAA1279,KIAA1467,KIAA1468,KIFC3,KITLG,KLF6,KMO,KYNU,LAMB3,LCOR,LIMK1,LOC146795,LOC153222,LOC283677,LOC284120,LOC285513,LOC286044,LOC286167,LOC389023,LOC390940,LOC57146,LOC643424,LOC653754,LOC92689,LOH11CR2A,LRRC25,LRRC35,LY6K,LY96,MAFF,MANBAL,MAP3K8,MAP4K3,MEIS3P1,MERTK,MGAT4B,MGC14376,MGC16142,MGC34646,MIDN,MIRN21,MMP1,MMP10,MORN2,MTMR9,MTSS1,MYOZ2,NBEAL1 /// ALS2CR16,NECAP1,NKIRAS1,NPEPPS,NR1D2,NRAS,NRP1,NUAK1,OLR1,OSTM1,OTUD1,P2RY14,PANX1,PBEF1,PELI1,PGA5 /// LOC643834 /,PGBD5,PHLDA1,PLAU,PPBP,PPCS,PPP1R15A,PPP3R1,PSD3,PTBP2,PTGFRN,PTK9,PTPLAD2,PTPN3,PTPRO,PTX3,RAB12,RAB8B,RASGRP3,RGS2,RHOB,RIN2,RIT1,RNASEL,RND3,RNF149,RNF19,SAMD9L,SAR1B,SCG2,SDC4,SEMA4D,SEPT10,SETBP1,SGK,SGPL1,SIGLEC9,SIPA1L2,SLC11A2,SLC12A6,SLC24A3,SOS1,SPRED1,SQSTM1,STAM2,STC1,STK17B,STX12,STX6,SYNJ1,TDO2,TFEC,TGIF,THAP1,THBD,TLR1,TLR6,TM6SF1,TM7SF4,TMEM15,TncRNA,TNFAIP6,TNFSF15,TPSAB1,TREM1,TRIM23,TRIP11,TTC30B,TUBB2A,U2AF1L1,UBE2W,UBE3C,UEVLD,ULK2,UPP1,USP53,WBP2,WDR19,WDR20,WHDC1,WNT5A,YES1,ZC3H5,ZCCHC14,ZFHX1B,ZFP36,ZFP36L1,ZFX /// ZFY,ZIC2,ZMYND11,ZNF222,ZNF238 GENE_SYMBOLS A2M,NCEH1,ABCA1,ABHD2,ACP5,ACSM3,ACVR1,ADAM28,ADAMDEC1,ANKRD12,AQP9,,ARID5B,ARL4C,ARL5B,ARNT2,ARRDC3,ASPH,AUH,CSRNP1,BCL3,BCL6,KLHL28,BTBD7,BTG2,BTG3,CACUL1,ATG101,LACC1,C15orf48,C1QC,CAPRIN2,DNAAF9,RETREG2,C3AR1,GASK1B,BBS12,C5AR1,DCANP1,RABL6,CAB39L,CAMK2D,CC2D1B,CCL20,CCL4,,CD300C,CD80,CDC37L1,CFL2,CGRRF1,CLEC2B,CLEC7A,CNIH3,COL6A3,COQ10B,CPEB4,CREBL2,CRK,CTTNBP2NL,CXCL1,CXCL2,CXCL3,CXCL6,FAM199X,CYP2E1,DAB2,DAPK1,DDIT4L,APPL2,DOCK4,DPY19L4,DUSP1,DUSP5,DNAAF4,EFNB2,EGR2,EGR3,ELK4,EMP1,ADGRE2,EOMES,EPAS1,FABP4,FAM13A,TMEM255A,FBXL13,FBXO32,FCHO2,FCRLB,DENND1B,PID1,CCDC71L,FNDC3A,FOS,FOXQ1,AKTIP,,GALNT4,GAN,GBP3,GCNT2,GDF15,GFPT1,GJA1,GLIPR1,GNA12,GNG11,GNPDA2,GPATCH2,GPNMB,HCAR3,GPR137B,HAVCR2,HBP1,HECTD2,HECW2,HINT3,H2BC4,H2BC8,HMOX1,HNMT,HSD11B1,ICAM1,IER3,IFI16,CADM1,IL10,IL10RA,IL1A,IL1B,IL1R1,IL1R2,IL6ST,IL7R,IRS1,JAKMIP2,JUN,JUNB,KBTBD8,KCNJ15,KCNJ2,KCTD3,KDELR3,KIAA0232,ATG14,KIFBP,FAM234B,RELCH,KIFC3,KITLG,KLF6,KMO,KYNU,LAMB3,LCOR,LIMK1,LINC02003,CREBRF,REC114,,GPRIN3,PPP1R3B,ST3GAL1,DPP10-AS1,PINLYP,LDAF1,,,FAM114A1,VWA5A,LRRC25,TBCEL,LY6K,LY96,MAFF,MANBAL,MAP3K8,MAP4K3,MEIS3P1,MERTK,MGAT4B,MIR22HG,,CLVS1,MIDN,MIR21,MMP1,MMP10,MORN2,MTMR9,MTSS1,MYOZ2,,NECAP1,NKIRAS1,NPEPPS,NR1D2,NRAS,NRP1,NUAK1,OLR1,OSTM1,OTUD1,P2RY14,PANX1,NAMPT,PELI1,,PGBD5,PHLDA1,PLAU,PPBP,PPCS,PPP1R15A,PPP3R1,PSD3,PTBP2,PTGFRN,TWF1,HACD4,PTPN3,PTPRO,PTX3,RAB12,RAB8B,RASGRP3,RGS2,RHOB,RIN2,RIT1,RNASEL,RND3,RNF149,RNF19A,SAMD9L,SAR1B,SCG2,SDC4,SEMA4D,SEPTIN10,SETBP1,SGK1,SGPL1,SIGLEC9,SIPA1L2,SLC11A2,SLC12A6,SLC24A3,SOS1,SPRED1,SQSTM1,STAM2,STC1,STK17B,STX12,STX6,SYNJ1,TDO2,TFEC,TGIF1,THAP1,THBD,TLR1,TLR6,TM6SF1,DCSTAMP,DOLK,TNFAIP6,TNFSF15,TPSAB1,TREM1,TRIM23,TRIP11,TTC30B,TUBB2A,NEAT1,ZRSR2P1,UBE2W,UBE3C,UEVLD,ULK2,UPP1,USP53,WBP2,WDR19,WDR20,WHAMM,WNT5A,YES1,UNK,ZCCHC14,ZEB2,ZFP36,ZFP36L1,,ZIC2,ZMYND11,ZNF222,ZBTB18 FOUNDER_NAMES