STANDARD_NAME GSE10094_LCMV_VS_LISTERIA_IND_EFF_CD4_TCELL_DN SYSTEMATIC_NAME M3047 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE10094_LCMV_VS_LISTERIA_IND_EFF_CD4_TCELL_DN NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes down-regulated in comparison of CD4 [GeneID=920] T cells from mice challenged with LCMV versus those challenged with Listeria-gp61. DESCRIPTION_FULL Following infection with LCMV, CD4+ SMARTA TCR transgenic cells (specific for the gp61-80 epitope of the LCMV glycoprotein) rapidly expand, become effector cells, and go on to form a long-lived memory population. Following infection with a recombinant Listeria monocytogenes expressing the LCMV epitope gp61-80, SMARTA cells also expand but display defective effector differentiation and fail to form memory. In an attempt to understand the signals required for CD4 T cell memory differentiation, we compared gene expression by SMARTA cells at the peak of the primary response following either Lm-gp61 or LCMV infection. PMID 18356084 GEOID GSE10094 AUTHORS Williams MA,Ravkov EV,Bevan MJ CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE10094_1068_200_DN FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS ABCA12,ACCSL,ADCY6,ADPRHL2,ADRA1A,AEBP1,ALOXE3,AMH,ANK1,ANO1,AQP6,ARHGAP23,ARHGEF11,ATF3,ATP7B,B4GALNT2,BDNF,BET1L,BMP7,C11orf63,C11orf74,C12orf57,C17orf89,C19orf6,C1orf106,C1orf51,C3orf52,CA8,CALML3,CAMK2N1,CCDC67,CCL4,CFI,CHMP4C,CLEC7A,CLIC6,CLN8,CRISP1,CXADR,DAZ2,DKFZp761E198,DND1,ENOX1,EPHB3,ESRP1,FAM171A1,FGL1,FHL5,FITM1,FLG,FLRT2,FLT3,FUT2,FXR2,G6PC,GABRA1,GALR3,GDF9,GIT1,GLRB,GNG8,H2AFJ,HAP1,HNRNPF,HRASLS,HS3ST3A1,HS3ST4,HSD17B3,HTR4,HYOU1,IFNGR2,IGLON5,INS,INSRR,IQSEC3,ISL2,ISX,KCNA7,KCNE1L,KCNH3,KCNJ6,KCTD1,KIAA1324L,KIAA1522,KRTCAP2,LAMTOR1,LAYN,LCAT,LGI4,LOC474358,LRRN4CL,LTB,LTB4R,MEFV,MGST1,MLPH,MS4A8B,MSR1,MUC13,MUTYH,MYO10,MYOM1,NEK6,NEUROD1,NKX2-1,NLRP10,NPC1L1,NPC2,NRP2,NTNG1,NUDT14,OAZ1,OSBPL6,P2RX1,PARM1,PATL2,PCDH10,PCDHB14,PCDHB3,PCYT1A,PDZD11,PHGR1,PIBF1,PIGO,PIM1,PKMYT1,PKP1,PLA2G3,PLIN5,PNPLA3,PPIA,PRPF19,PRSS36,PTCH2,PTMS,PTOV1,PTPLAD2,RABAC1,RBM25,RBM39,RBMS3,RBP3,RDH16,REG3G,RHAG,RHBDD3,RIBC1,ROBO1,RPL39,RPTOR,RUNDC3A,S100A8,SCTR,SEL1L2,SIGLEC1,SLC12A9,SLC15A5,SLC25A2,SLC25A31,SLC29A3,SLC35E4,SLC5A10,SLC6A2,SMTNL2,SNAI3,SNORD104,SPNS3,SS18L1,ST3GAL1,STEAP1,SYCP2,SYNGR4,TGIF2,TLR9,TMEM116,TMEM160,TMEM171,TMEM207,TMEM88,TMEM90A,TMEM92,TRANK1,TRPM2,UBXN2B,UCP2,UFC1,USP50,UTS2R,WDR60,WFDC1,WIPI1,XKRX,ZFP112,ZFP36,ZHX3,ZNF334,ZNF394,ZNF483,ZNF532,ZNF862 GENE_SYMBOLS ABCA12,ACCSL,ADCY6,ADPRS,ADRA1A,AEBP1,ALOXE3,AMH,ANK1,ANO1,AQP6,ARHGAP23,ARHGEF11,ATF3,ATP7B,B4GALNT2,BDNF,BET1L,BMP7,JHY,IFTAP,C12orf57,NDUFAF8,TMEM259,INAVA,CIART,C3orf52,CA8,CALML3,CAMK2N1,DEUP1,CCL4,CFI,CHMP4C,CLEC7A,CLIC6,CLN8,CRISP1,CXADR,DAZ2,AP5B1,DND1,ENOX1,EPHB3,ESRP1,FAM171A1,FGL1,FHL5,FITM1,FLG,FLRT2,FLT3,FUT2,FXR2,G6PC1,GABRA1,GALR3,GDF9,GIT1,GLRB,GNG8,H2AJ,HAP1,HNRNPF,PLAAT1,HS3ST3A1,HS3ST4,HSD17B3,HTR4,HYOU1,IFNGR2,IGLON5,INS,INSRR,IQSEC3,ISL2,ISX,KCNA7,KCNE5,KCNH3,KCNJ6,KCTD1,ELAPOR2,KIAA1522,KRTCAP2,LAMTOR1,LAYN,LCAT,LGI4,SORCS3-AS1,LRRN4CL,LTB,LTB4R,MEFV,MGST1,MLPH,MS4A8,MSR1,MUC13,MUTYH,MYO10,MYOM1,NEK6,NEUROD1,NKX2-1,NLRP10,NPC1L1,NPC2,NRP2,NTNG1,NUDT14,OAZ1,OSBPL6,P2RX1,PARM1,PATL2,PCDH10,PCDHB14,PCDHB3,PCYT1A,PDZD11,PHGR1,PIBF1,PIGO,PIM1,PKMYT1,PKP1,PLA2G3,PLIN5,PNPLA3,PPIA,PRPF19,PRSS36,PTCH2,PTMS,PTOV1,HACD4,RABAC1,RBM25,RBM39,RBMS3,RBP3,RDH16,REG3G,RHAG,RHBDD3,RIBC1,ROBO1,RPL39,RPTOR,RUNDC3A,S100A8,SCTR,SEL1L2,SIGLEC1,SLC12A9,SLC15A5,SLC25A2,SLC25A31,SLC29A3,SLC35E4,SLC5A10,SLC6A2,SMTNL2,SNAI3,SNORD104,SPNS3,SS18L1,ST3GAL1,STEAP1,SYCP2,SYNGR4,TGIF2,TLR9,TMEM116,TMEM160,TMEM171,TMEM207,TMEM88,SYNDIG1L,TMEM92,TRANK1,TRPM2,UBXN2B,UCP2,UFC1,USP50,UTS2R,DYNC2I1,WFDC1,WIPI1,XKRX,ZNF112,ZFP36,ZHX3,ZNF334,ZNF394,ZNF483,ZNF532,ZNF862 FOUNDER_NAMES