STANDARD_NAME	GSE11057_NAIVE_CD4_VS_PBMC_CD4_TCELL_UP
SYSTEMATIC_NAME	M3108
COLLECTION	C7:IMMUNESIGDB
MSIGDB_URL	https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE11057_NAIVE_CD4_VS_PBMC_CD4_TCELL_UP
NAMESPACE	HUMAN_GENE_SYMBOL
DESCRIPTION_BRIEF	Genes up-regulated in comparison of naive T cells versus peripheral blood mononuclear cells (PBMC).
DESCRIPTION_FULL	Microarray deconvolution is a technique for quantifying the relative abundance of constituent cells in a mixture based on that mixture's microarray signature and the signatures of the purified constituents. It has been applied to yeast and other systems but not to blood samples. Here we test the ability of this technique to determine the fractions of subsets of memory T cells in peripheral blood mononuclear cell (PBMC) samples.
PMID	19568420
GEOID	GSE11057
AUTHORS	Abbas AR,Wolslegel K,Seshasayee D,Modrusan Z,Clark HF
CONTRIBUTOR	Jernej Godec
CONTRIBUTOR_ORG	Dana-Farber Cancer Institute
EXACT_SOURCE	GSE11057_1612_200_UP
FILTERED_BY_SIMILARITY	
EXTERNAL_NAMES_FOR_SIMILAR_TERMS	
EXTERNAL_DETAILS_URL	
SOURCE_MEMBERS	ABLIM1,ACPL2,ADSL,AGMAT,AK5,AMIGO1,AMIGO2,ANKRD36,APBB3,ARFIP2,ARHGEF18,ASXL1,ATM,AXIN2,BAG3,BBS2,BCL11B,BIN1,C11orf2,C12orf29,C12orf57,C13orf15,C14orf169,C5orf39,C5orf53,C6orf48,C7orf42,C9orf5,CAMK2G,CAMK4,CAND2,CD27,CD6,CHD3,CLK4,CLPP,CNOT6L,CNST,COQ10A,COX7C,CPSF4,CYHR1,DIDO1,DKC1,DKFZP434I0714,DNAJA3,DNAJB1,ECHDC2,EDC4,EEF1B2,EFNA1,EGLN2,EIF2D,EP400NL,EPHA1,EVL,EXOSC2,FAIM3,FAM113B,FAM134B,FAM48A,FLJ37453,FNBP4,FOXO1,GALNT12,GON4L,GPA33,GPRASP1,GRAP,HAPLN3,IGSF8,IL11RA,IL6ST,IMMP1L,IPCEF1,IPO4,ITK,KIAA0114,LAS1L,LCK,LEPROTL1,LINS,LIX1L,LOC282997,LOC286161,LOC338799,LOC400657,LOC644135,LOC93622,LRRN3,LTBP3,LYPD3,LYRM7,MAD1L1,MAFK,MAML2,MAN1C1,MEGF6,METTL16,MGC40069,MLLT3,MORC4,MTERFD2,NCRNA00282,NET1,NEURL4,NGFRAP1,NIPAL3,NOG,NOL11,NPAT,NPM3,NSMCE4A,NSUN5P2,NUCB2,OCIAD2,PCYOX1L,PHF1,PHF10,PHF15,PIK3CD,PIK3IP1,PITHD1,PITRM1,PLAG1,PLEKHB1,PMPCA,POLR1E,PP7080,PPP2R2D,PRDX2,PRKRIP1,PSMB5,QRICH1,RAB43,RABEPK,RCAN3,RIMKLB,RNFT2,RPL19,RPS6KA5,RPUSD2,RPUSD4,RSBN1,SARDH,SCML1,SCML4,SEPW1,SF3A3,SIGIRR,SLC25A23,SLC25A45,SLC39A13,SNHG1,SNPH,SNX9,SOX8,SPIN3,STAT5A,STAT5B,STMN3,SUSD3,SYNJ2,TARBP2,TBRG4,TECPR1,THUMPD1,TMEM143,TMEM194A,TMEM63A,TNK1,TRAF3IP3,TSPAN18,TSPYL4,TUBG2,UBXN1,UPF1,USP20,VPS52,XPO6,ZBTB4,ZBTB40,ZCCHC14,ZFP37,ZNF189,ZNF204P,ZNF212,ZNF251,ZNF275,ZNF32,ZNF331,ZNF395,ZNF407,ZNF420,ZNF470,ZNF510,ZNF575,ZNF76,ZNF862,ZRANB1
GENE_SYMBOLS	ABLIM1,PXYLP1,ADSL,AGMAT,AK5,AMIGO1,AMIGO2,ANKRD36,APBB3,ARFIP2,ARHGEF18,ASXL1,ATM,AXIN2,BAG3,BBS2,BCL11B,BIN1,VPS51,RLIG1,C12orf57,RGCC,RIOX1,ANXA2R,IGIP,SNHG32,TMEM248,TMEM245,CAMK2G,CAMK4,CAND2,CD27,CD6,CHD3,CLK4,CLPP,CNOT6L,CNST,COQ10A,COX7C,CPSF4,ZFTRAF1,DIDO1,DKC1,MIR4453HG,DNAJA3,DNAJB1,ECHDC2,EDC4,EEF1B2,EFNA1,EGLN2,EIF2D,EP400P1,EPHA1,EVL,EXOSC2,FCMR,PCED1B,RETREG1,SUPT20H,SPEN-AS1,FNBP4,FOXO1,GALNT12,GON4L,GPA33,GPRASP1,GRAP,HAPLN3,IGSF8,IL11RA,IL6ST,IMMP1L,IPCEF1,IPO4,ITK,DANCR,LAS1L,LCK,LEPROTL1,LINS1,LIX1L,PDCD4-AS1,,LINC01089,ZNF407-AS1,PDE7B-AS1,MRFAP1L2,LRRN3,LTBP3,LYPD3,LYRM7,MAD1L1,MAFK,MAML2,MAN1C1,MEGF6,METTL16,,MLLT3,MORC4,MTERF4,TMEM272,NET1,NEURL4,BEX3,NIPAL3,NOG,NOL11,NPAT,NPM3,NSMCE4A,NSUN5P2,NUCB2,OCIAD2,PCYOX1L,PHF1,PHF10,JADE2,PIK3CD,PIK3IP1,PITHD1,PITRM1,PLAG1,PLEKHB1,PMPCA,POLR1E,SLC9A3-OT1,PPP2R2D,PRDX2,PRKRIP1,PSMB5,QRICH1,RAB43,RABEPK,RCAN3,RIMKLB,RNFT2,RPL19,RPS6KA5,RPUSD2,RPUSD4,RSBN1,SARDH,SCML1,SCML4,SELENOW,SF3A3,SIGIRR,SLC25A23,SLC25A45,SLC39A13,SNHG1,SNPH,SNX9,SOX8,SPIN3,STAT5A,STAT5B,STMN3,SUSD3,SYNJ2,TARBP2,TBRG4,TECPR1,THUMPD1,TMEM143,NEMP1,TMEM63A,TNK1,TRAF3IP3,TSPAN18,TSPYL4,TUBG2,UBXN1,UPF1,USP20,VPS52,XPO6,ZBTB4,ZBTB40,ZCCHC14,ZFP37,ZNF189,ZNF204P,ZNF212,ZNF251,ZNF275,ZNF32,ZNF331,ZNF395,ZNF407,ZNF420,ZNF470,ZNF510,ZNF575,ZNF76,ZNF862,ZRANB1
FOUNDER_NAMES