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     See license terms at www.gsea-msigdb.org/gsea/license_terms_list. Please note that certain gene sets have special access terms.
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<MSIGDB BUILD_DATE="Jan 29, 2026" VERSION="2026.1.Hs" NAME="export">
    <GENESET STANDARD_NAME="GSE11057_NAIVE_CD4_VS_PBMC_CD4_TCELL_UP" SYSTEMATIC_NAME="M3108" HISTORICAL_NAMES="" PMID="19568420" AUTHORS="Abbas AR,Wolslegel K,Seshasayee D,Modrusan Z,Clark HF" GEOID="GSE11057" EXACT_SOURCE="GSE11057_1612_200_UP" GENESET_LISTING_URL="" EXTERNAL_DETAILS_URL="" CHIP="HUMAN_GENE_SYMBOL" CONTRIBUTOR="Jernej Godec" CONTRIBUTOR_ORG="Dana-Farber Cancer Institute" DESCRIPTION_BRIEF="Genes up-regulated in comparison of naive T cells versus peripheral blood mononuclear cells (PBMC)." DESCRIPTION_FULL="Microarray deconvolution is a technique for quantifying the relative abundance of constituent cells in a mixture based on that mixture's microarray signature and the signatures of the purified constituents. It has been applied to yeast and other systems but not to blood samples. Here we test the ability of this technique to determine the fractions of subsets of memory T cells in peripheral blood mononuclear cell (PBMC) samples." TAGS="" MEMBERS="ABLIM1,ACPL2,ADSL,AGMAT,AK5,AMIGO1,AMIGO2,ANKRD36,APBB3,ARFIP2,ARHGEF18,ASXL1,ATM,AXIN2,BAG3,BBS2,BCL11B,BIN1,C11orf2,C12orf29,C12orf57,C13orf15,C14orf169,C5orf39,C5orf53,C6orf48,C7orf42,C9orf5,CAMK2G,CAMK4,CAND2,CD27,CD6,CHD3,CLK4,CLPP,CNOT6L,CNST,COQ10A,COX7C,CPSF4,CYHR1,DIDO1,DKC1,DKFZP434I0714,DNAJA3,DNAJB1,ECHDC2,EDC4,EEF1B2,EFNA1,EGLN2,EIF2D,EP400NL,EPHA1,EVL,EXOSC2,FAIM3,FAM113B,FAM134B,FAM48A,FLJ37453,FNBP4,FOXO1,GALNT12,GON4L,GPA33,GPRASP1,GRAP,HAPLN3,IGSF8,IL11RA,IL6ST,IMMP1L,IPCEF1,IPO4,ITK,KIAA0114,LAS1L,LCK,LEPROTL1,LINS,LIX1L,LOC282997,LOC286161,LOC338799,LOC400657,LOC644135,LOC93622,LRRN3,LTBP3,LYPD3,LYRM7,MAD1L1,MAFK,MAML2,MAN1C1,MEGF6,METTL16,MGC40069,MLLT3,MORC4,MTERFD2,NCRNA00282,NET1,NEURL4,NGFRAP1,NIPAL3,NOG,NOL11,NPAT,NPM3,NSMCE4A,NSUN5P2,NUCB2,OCIAD2,PCYOX1L,PHF1,PHF10,PHF15,PIK3CD,PIK3IP1,PITHD1,PITRM1,PLAG1,PLEKHB1,PMPCA,POLR1E,PP7080,PPP2R2D,PRDX2,PRKRIP1,PSMB5,QRICH1,RAB43,RABEPK,RCAN3,RIMKLB,RNFT2,RPL19,RPS6KA5,RPUSD2,RPUSD4,RSBN1,SARDH,SCML1,SCML4,SEPW1,SF3A3,SIGIRR,SLC25A23,SLC25A45,SLC39A13,SNHG1,SNPH,SNX9,SOX8,SPIN3,STAT5A,STAT5B,STMN3,SUSD3,SYNJ2,TARBP2,TBRG4,TECPR1,THUMPD1,TMEM143,TMEM194A,TMEM63A,TNK1,TRAF3IP3,TSPAN18,TSPYL4,TUBG2,UBXN1,UPF1,USP20,VPS52,XPO6,ZBTB4,ZBTB40,ZCCHC14,ZFP37,ZNF189,ZNF204P,ZNF212,ZNF251,ZNF275,ZNF32,ZNF331,ZNF395,ZNF407,ZNF420,ZNF470,ZNF510,ZNF575,ZNF76,ZNF862,ZRANB1" MEMBERS_SYMBOLIZED="ABLIM1,ADSL,AGMAT,AK5,AMIGO1,AMIGO2,ANKRD36,ANXA2R,APBB3,ARFIP2,ARHGEF18,ASXL1,ATM,AXIN2,BAG3,BBS2,BCL11B,BEX3,BIN1,C12orf57,CAMK2G,CAMK4,CAND2,CD27,CD6,CHD3,CLK4,CLPP,CNOT6L,CNST,COQ10A,COX7C,CPSF4,DANCR,DIDO1,DKC1,DNAJA3,DNAJB1,ECHDC2,EDC4,EEF1B2,EFNA1,EGLN2,EIF2D,EP400P1,EPHA1,EVL,EXOSC2,FCMR,FNBP4,FOXO1,GALNT12,GON4L,GPA33,GPRASP1,GRAP,HAPLN3,IGIP,IGSF8,IL11RA,IL6ST,IMMP1L,IPCEF1,IPO4,ITK,JADE2,LAS1L,LCK,LEPROTL1,LINC01089,LINS1,LIX1L,LRRN3,LTBP3,LYPD3,LYRM7,MAD1L1,MAFK,MAML2,MAN1C1,MEGF6,METTL16,MIR4453HG,MLLT3,MORC4,MRFAP1L2,MTERF4,NEMP1,NET1,NEURL4,NIPAL3,NOG,NOL11,NPAT,NPM3,NSMCE4A,NSUN5P2,NUCB2,OCIAD2,PCED1B,PCYOX1L,PDCD4-AS1,PDE7B-AS1,PHF1,PHF10,PIK3CD,PIK3IP1,PITHD1,PITRM1,PLAG1,PLEKHB1,PMPCA,POLR1E,PPP2R2D,PRDX2,PRKRIP1,PSMB5,PXYLP1,QRICH1,RAB43,RABEPK,RCAN3,RETREG1,RGCC,RIMKLB,RIOX1,RLIG1,RNFT2,RPL19,RPS6KA5,RPUSD2,RPUSD4,RSBN1,SARDH,SCML1,SCML4,SELENOW,SF3A3,SIGIRR,SLC25A23,SLC25A45,SLC39A13,SLC9A3-OT1,SNHG1,SNHG32,SNPH,SNX9,SOX8,SPEN-AS1,SPIN3,STAT5A,STAT5B,STMN3,SUPT20H,SUSD3,SYNJ2,TARBP2,TBRG4,TECPR1,THUMPD1,TMEM143,TMEM245,TMEM248,TMEM272,TMEM63A,TNK1,TRAF3IP3,TSPAN18,TSPYL4,TUBG2,UBXN1,UPF1,USP20,VPS51,VPS52,XPO6,ZBTB4,ZBTB40,ZCCHC14,ZFP37,ZFTRAF1,ZNF189,ZNF204P,ZNF212,ZNF251,ZNF275,ZNF32,ZNF331,ZNF395,ZNF407,ZNF407-AS1,ZNF420,ZNF470,ZNF510,ZNF575,ZNF76,ZNF862,ZRANB1" MEMBERS_EZID="10223,10244,10276,10307,10360,10531,10750,10838,10868,10898,10946,1107,11083,11123,112398,113246,113791,128077,130916,132299,1350,145864,147923,158,163882,169981,171023,1736,1757,1933,1939,1942,1953,196294,203328,2041,22869,23066,2308,23174,23203,23214,23270,23306,23338,23360,23370,23404,23484,23642,23644,23647,23731,246175,256380,25845,25851,25926,260294,26034,26289,27018,27076,27079,27175,274,282997,283130,283521,284346,28984,30812,3337,338799,339122,347902,347918,3572,3590,3702,375248,388566,389289,3932,3983,400657,4054,4300,472,4863,492311,4925,50626,50854,50861,51035,51429,51466,5252,5293,5324,54463,54553,54665,54674,54764,54780,54856,54870,55069,55180,55260,55268,55274,55422,55578,55623,55628,55844,55893,5693,57095,57134,57185,57291,57396,57463,57494,57659,583,58473,59307,5976,6143,6293,6322,6415,643641,644135,64425,64919,6776,6777,6895,7001,729614,738,7539,7580,7629,7743,7754,78991,79066,79085,79695,79697,79706,79710,79711,7975,79814,7988,80342,814,818,81887,8192,8313,8379,84441,84461,84881,84900,8711,8871,90139,90624,9093,90987,91252,91298,91523,9214,923,92370,9238,9241,9252,93058,93185,93622,939,9531,9725,9737,9751,9923" MEMBERS_MAPPING="ABLIM1,ABLIM1,3983|ACPL2,PXYLP1,92370|ADSL,ADSL,158|AGMAT,AGMAT,79814|AK5,AK5,26289|AMIGO1,AMIGO1,57463|AMIGO2,AMIGO2,347902|ANKRD36,ANKRD36,375248|APBB3,APBB3,10307|ARFIP2,ARFIP2,23647|ARHGEF18,ARHGEF18,23370|ASXL1,ASXL1,171023|ATM,ATM,472|AXIN2,AXIN2,8313|BAG3,BAG3,9531|BBS2,BBS2,583|BCL11B,BCL11B,64919|BIN1,BIN1,274|C11orf2,VPS51,738|C12orf29,RLIG1,91298|C12orf57,C12orf57,113246|C13orf15,RGCC,28984|C14orf169,RIOX1,79697|C5orf39,ANXA2R,389289|C5orf53,IGIP,492311|C6orf48,SNHG32,50854|C7orf42,TMEM248,55069|C9orf5,TMEM245,23731|CAMK2G,CAMK2G,818|CAMK4,CAMK4,814|CAND2,CAND2,23066|CD27,CD27,939|CD6,CD6,923|CHD3,CHD3,1107|CLK4,CLK4,57396|CLPP,CLPP,8192|CNOT6L,CNOT6L,246175|CNST,CNST,163882|COQ10A,COQ10A,93058|COX7C,COX7C,1350|CPSF4,CPSF4,10898|CYHR1,ZFTRAF1,50626|DIDO1,DIDO1,11083|DKC1,DKC1,1736|DKFZP434I0714,MIR4453HG,54553|DNAJA3,DNAJA3,9093|DNAJB1,DNAJB1,3337|ECHDC2,ECHDC2,55268|EDC4,EDC4,23644|EEF1B2,EEF1B2,1933|EFNA1,EFNA1,1942|EGLN2,EGLN2,112398|EIF2D,EIF2D,1939|EP400NL,EP400P1,347918|EPHA1,EPHA1,2041|EVL,EVL,51466|EXOSC2,EXOSC2,23404|FAIM3,FCMR,9214|FAM113B,PCED1B,91523|FAM134B,RETREG1,54463|FAM48A,SUPT20H,55578|FLJ37453,SPEN-AS1,729614|FNBP4,FNBP4,23360|FOXO1,FOXO1,2308|GALNT12,GALNT12,79695|GON4L,GON4L,54856|GPA33,GPA33,10223|GPRASP1,GPRASP1,9737|GRAP,GRAP,10750|HAPLN3,HAPLN3,145864|IGSF8,IGSF8,93185|IL11RA,IL11RA,3590|IL6ST,IL6ST,3572|IMMP1L,IMMP1L,196294|IPCEF1,IPCEF1,26034|IPO4,IPO4,79711|ITK,ITK,3702|KIAA0114,DANCR,57291|LAS1L,LAS1L,81887|LCK,LCK,3932|LEPROTL1,LEPROTL1,23484|LINS,LINS1,55180|LIX1L,LIX1L,128077|LOC282997,PDCD4-AS1,282997|LOC286161,null,null|LOC338799,LINC01089,338799|LOC400657,ZNF407-AS1,400657|LOC644135,PDE7B-AS1,644135|LOC93622,MRFAP1L2,93622|LRRN3,LRRN3,54674|LTBP3,LTBP3,4054|LYPD3,LYPD3,27076|LYRM7,LYRM7,90624|MAD1L1,MAD1L1,8379|MAFK,MAFK,7975|MAML2,MAML2,84441|MAN1C1,MAN1C1,57134|MEGF6,MEGF6,1953|METTL16,METTL16,79066|MGC40069,null,null|MLLT3,MLLT3,4300|MORC4,MORC4,79710|MTERFD2,MTERF4,130916|NCRNA00282,TMEM272,283521|NET1,NET1,10276|NEURL4,NEURL4,84461|NGFRAP1,BEX3,27018|NIPAL3,NIPAL3,57185|NOG,NOG,9241|NOL11,NOL11,25926|NPAT,NPAT,4863|NPM3,NPM3,10360|NSMCE4A,NSMCE4A,54780|NSUN5P2,NSUN5P2,260294|NUCB2,NUCB2,4925|OCIAD2,OCIAD2,132299|PCYOX1L,PCYOX1L,78991|PHF1,PHF1,5252|PHF10,PHF10,55274|PHF15,JADE2,23338|PIK3CD,PIK3CD,5293|PIK3IP1,PIK3IP1,113791|PITHD1,PITHD1,57095|PITRM1,PITRM1,10531|PLAG1,PLAG1,5324|PLEKHB1,PLEKHB1,58473|PMPCA,PMPCA,23203|POLR1E,POLR1E,64425|PP7080,SLC9A3-OT1,25845|PPP2R2D,PPP2R2D,55844|PRDX2,PRDX2,7001|PRKRIP1,PRKRIP1,79706|PSMB5,PSMB5,5693|QRICH1,QRICH1,54870|RAB43,RAB43,339122|RABEPK,RABEPK,10244|RCAN3,RCAN3,11123|RIMKLB,RIMKLB,57494|RNFT2,RNFT2,84900|RPL19,RPL19,6143|RPS6KA5,RPS6KA5,9252|RPUSD2,RPUSD2,27079|RPUSD4,RPUSD4,84881|RSBN1,RSBN1,54665|SARDH,SARDH,1757|SCML1,SCML1,6322|SCML4,SCML4,256380|SEPW1,SELENOW,6415|SF3A3,SF3A3,10946|SIGIRR,SIGIRR,59307|SLC25A23,SLC25A23,79085|SLC25A45,SLC25A45,283130|SLC39A13,SLC39A13,91252|SNHG1,SNHG1,23642|SNPH,SNPH,9751|SNX9,SNX9,51429|SOX8,SOX8,30812|SPIN3,SPIN3,169981|STAT5A,STAT5A,6776|STAT5B,STAT5B,6777|STMN3,STMN3,50861|SUSD3,SUSD3,203328|SYNJ2,SYNJ2,8871|TARBP2,TARBP2,6895|TBRG4,TBRG4,9238|TECPR1,TECPR1,25851|THUMPD1,THUMPD1,55623|TMEM143,TMEM143,55260|TMEM194A,NEMP1,23306|TMEM63A,TMEM63A,9725|TNK1,TNK1,8711|TRAF3IP3,TRAF3IP3,80342|TSPAN18,TSPAN18,90139|TSPYL4,TSPYL4,23270|TUBG2,TUBG2,27175|UBXN1,UBXN1,51035|UPF1,UPF1,5976|USP20,USP20,10868|VPS52,VPS52,6293|XPO6,XPO6,23214|ZBTB4,ZBTB4,57659|ZBTB40,ZBTB40,9923|ZCCHC14,ZCCHC14,23174|ZFP37,ZFP37,7539|ZNF189,ZNF189,7743|ZNF204P,ZNF204P,7754|ZNF212,ZNF212,7988|ZNF251,ZNF251,90987|ZNF275,ZNF275,10838|ZNF32,ZNF32,7580|ZNF331,ZNF331,55422|ZNF395,ZNF395,55893|ZNF407,ZNF407,55628|ZNF420,ZNF420,147923|ZNF470,ZNF470,388566|ZNF510,ZNF510,22869|ZNF575,ZNF575,284346|ZNF76,ZNF76,7629|ZNF862,ZNF862,643641|ZRANB1,ZRANB1,54764" FILTERED_BY_SIMILARITY="" FOUNDER_NAMES="" REFINEMENT_DATASETS="" VALIDATION_DATASETS="" CATEGORY_CODE="C7" ORGANISM="Homo sapiens" SUB_CATEGORY_CODE="IMMUNESIGDB"/>
</MSIGDB>
