STANDARD_NAME GSE12963_UNINF_VS_ENV_AND_NEF_AND_VPR_DEFICIENT_HIV1_INF_CD4_TCELL_DN SYSTEMATIC_NAME M448 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE12963_UNINF_VS_ENV_AND_NEF_AND_VPR_DEFICIENT_HIV1_INF_CD4_TCELL_DN NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes down-regulated in control CD4 [GeneID=920] T cells versus those infected with HIV-1 viruses lacking Env, Vpr and Nef. DESCRIPTION_FULL The high mutation rate of HIV is linked to the generation of viruses expressing proteins with altered function whose impact on disease progression is unknown. We investigated the effects of HIV-1 viruses lacking Env, Vpr and Nef on CD4+ T cell gene expression using high-density DNA microarray analysis and functional assays. PMID 19050264 GEOID GSE12963 AUTHORS Dabrowska A,Kim N,Aldovini A CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE12963_2629_200_DN FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS 1700012B09Rik,1700013N18Rik,1700025F22Rik,2900052L18Rik,4921539E11Rik,4930579C15Rik,4932431P20Rik,5730410E15Rik,5730590G19Rik,6330527O06Rik,6430571L13Rik,9030418K01Rik,9130219A07Rik,ABCF1,ADCY8,ANKRD13B,ANLN,APBA2,ARHGEF17,ASPN,ATP10B,BC089597,BEX1,BOP1,BSG,CAD,CASZ1,CCDC112,CCDC159,CCDC68,CCL4,CDC34,CDC42BPG,CES8,CHAC1,CHDH,CLEC4A3,CLSPN,CLSTN1,CNTN6,COBLL1,COX5B,CPNE2,CRIP2,CUEDC1,CXCL3,CXXC4,D1BWG0212E,DAGLA,DDN,DLX1,DRD2,DSCC1,DUSP15,EAF2,ECT2,EFTUD2,EGFR,EIF2B5,ENO4,F12,FAM71F2,FKRP,GAPDH,GFAP,GKAP1,GM10134,GM10139,GM10779,GM12109,GM4804,GM4833,GM4980,GM5039,GM5069,GM5109,GM5426,GM5746,GM6366,GM648,GM6625,GM6718,GM6883,GM7183,GM7194,GM8055,GM8587,GM8659,GM8824,GM9034,GM9081,GM9919,GNA15,GNAL,GPR64,GRWD1,GSTO2,GYS2,H2-M10.3,H2-Q10,HCK,HIST1H2BA,HPN,ICAM1,IGK,IL23A,IPO4,IRG1,ITPRIPL1,KLRC1,KLRC2,KPNA2,LOC638560,LOC664934,LRRC15,MAGED1,MIF,MIR448,MIR692-1,MIR701,MLF1,MLPH,MRPS10,MTAP1B,NETO1,NHLRC1,OLFR1102,OLFR1232,OLFR211,OLFR220,OLFR516,OLFR649,OLFR65,OLFR700,OLFR765,OLFR815,ORF63,PCYOX1L,PDZK1IP1,PERP,PGAM1,PHLDA3,PIK3AP1,PLA2G2E,PLEKHM2,PLP2,PODNL1,POLA2,PPAP2B,PRDM11,PROC,PRR18,PRSS33,PSD,PSME2,PTPN5,RAD54L,RANBP1,RBMXRT,REG3A,RGS12,RNASE9,RRS1,SAV1,SCAMP2,SDC4,SERPINE2,SEZ6L,SHC1,SIX4,SMYD2,SNX9,SPATA7,SPATS1,SPATS2,SVS1,SYNPO,TBC1D8,TFG,THBS1,THOP1,THSD1,TMEM30C,TMEM37,TMEM82,TNFRSF21,TNFSF11,TOMM40,TRIM72,TSNAXIP1,TTC12,TTK,TUBB6,TXNL4B,UGT2B5,UQCRQ,VMN2R120,XPNPEP1,ZC3H12C,ZFP850 GENE_SYMBOLS ,,,,,,,,,,,,,ABCF1,ADCY8,ANKRD13B,ANLN,APBA2,ARHGEF17,ASPN,ATP10B,,BEX1,BOP1,BSG,CAD,CASZ1,CCDC112,CCDC159,CCDC68,CCL4,CDC34,CDC42BPG,CES4A,CHAC1,CHDH,,CLSPN,CLSTN1,CNTN6,COBLL1,COX5B,CPNE2,CRIP2,CUEDC1,CXCL3,CXXC4,,DAGLA,DDN,DLX1,DRD2,DSCC1,DUSP15,EAF2,ECT2,EFTUD2,EGFR,EIF2B5,ENO4,F12,GARIN1A,FKRP,GAPDH,GFAP,GKAP1,,,,,,,,,,,,,,,,,,,,,,,,,,,GNA15,GNAL,ADGRG2,GRWD1,GSTO2,GYS2,,,HCK,H2BC1,HPN,ICAM1,,IL23A,IPO4,ACOD1,ITPRIPL1,KLRC1,KLRC2,KPNA2,,,LRRC15,MAGED1,MIF,MIR448,,,MLF1,MLPH,MRPS10,,NETO1,NHLRC1,,,,,,,,,,,,PCYOX1L,PDZK1IP1,PERP,PGAM1,PHLDA3,PIK3AP1,PLA2G2E,PLEKHM2,PLP2,PODNL1,POLA2,PLPP3,PRDM11,PROC,PRR18,PRSS33,PSD,PSME2,PTPN5,RAD54L,RANBP1,,REG3A,RGS12,RNASE9,RRS1,SAV1,SCAMP2,SDC4,SERPINE2,SEZ6L,SHC1,SIX4,SMYD2,SNX9,SPATA7,SPATS1,SPATS2,,SYNPO,TBC1D8,TFG,THBS1,THOP1,THSD1,TMEM30CP,TMEM37,TMEM82,TNFRSF21,TNFSF11,TOMM40,TRIM72,TSNAXIP1,TTC12,TTK,TUBB6,TXNL4B,,UQCRQ,,XPNPEP1,ZC3H12C, FOUNDER_NAMES