STANDARD_NAME GSE3039_NKT_CELL_VS_ALPHABETA_CD8_TCELL_UP SYSTEMATIC_NAME M6429 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE3039_NKT_CELL_VS_ALPHABETA_CD8_TCELL_UP NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes up-regulated in NKT cell versus CD8A CD8B [GeneID=925;926] T cells. DESCRIPTION_FULL Three innate (B1-B, NKT, CD8aaT cells) and adaptive (B2-B, CD4T, CD8abT cells) cell-types were sorted by FACS. Three biological replicates for NKT, CD4T, CD8aaT, CD8abT cells and two biological replicates for B1 and B2 cells were generated and the expression profiles were determined using Affymetrix Mu74Av2 chip. Comparisons between the sample groups allow the identification of genes differentially expressed between the innate and adaptive cell-types. PMID 16623764 GEOID GSE3039 AUTHORS Yamagata T,Benoist C,Mathis D CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE3039_3206_200_UP FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS ACBD6,ACVR2A,AGFG1,ALG9,ALKBH7,ANKRD28,APOC2,APOOL,APPL2,ARL6,ATG5,ATP5G3,BCCIP,C10orf11,C15orf63,C1orf85,C1QA,C1QB,C5orf42,C5orf43,C7orf30,C9orf119,CACNA1D,CBR1,CCDC115,CCDC90B,CCHCR1,CCNL1,CCT2,CCT3,CENPW,CEP152,CFDP1,CHST1,CKAP2L,CLEC5A,COPE,COQ3,CRELD1,CRLS1,CSDE1,CTPS,CTSS,CUL7,CX3CL1,CXCL11,CYP2C18,CYP51A1,DDB1,DDX50,DNAL1,DOK2,DSTN,EIF3G,ELK3,ELP4,ERGIC3,ESF1,ESR1,ESYT2,ETF1,FADS1,FAIM,FAM54A,FAM84B,FARP1,FARSB,FDFT1,FDPS,FEZ2,FNDC4,FOS,FOSB,FZD5,GADD45G,GART,GBP4,GGT1,GLOD4,GPR84,GTF2E2,GTF2F2,GTF3C6,HAUS1,HDDC2,HIBADH,HSD17B10,HSPA14,HSPB1,IL1R2,IL1RN,IMMT,INTS2,ITGA5,KAT2A,KIAA0101,KIAA0284,KIAA1522,KY,LCORL,LLGL1,LOX,LRRC42,LRRC58,MAFF,MAP4,MB21D2,MCTS1,MICALL2,MLF2,MND1,MRPL18,MRPL21,MRPL40,MRPL42,MRPS26,MSH6,N6AMT2,NAMPT,NCAPD2,NDUFA8,NEK2,NES,NFE2L2,NUCB2,NUCKS1,NUF2,P2RY12,PARVB,PDE7B,PEBP1,PFDN4,PFDN6,PGLS,PHF20,PLAUR,POFUT2,POLA2,PPP2R1A,PRDX3,PRIM2,PRKAR1A,PRODH,PSMA1,PSME1,PTRH1,PYCARD,RAB9A,RANBP1,RDX,RNASE4,RNF128,RNF19A,RPS19BP1,RPS27L,RPS8,RRBP1,S100A10,SAR1B,SCIN,SEC24A,SFXN1,SHB,SLC19A1,SLC25A1,SLC35B1,SLC6A8,SLC7A11,SMARCA4,SMYD2,SNRPF,SPCS1,SQSTM1,SRPR,SSR3,SSX2IP,STMN1,TFEC,TIMP2,TMED1,TMEM214,TMLHE,TNFRSF9,TPST1,TRAPPC3,TRAPPC6A,TRIM32,TSC22D1,TSR1,TTK,TUBA1B,U2AF1,UCHL5,VPS53,WDHD1,WDR35,WDR43,WDR74,ZDHHC16,ZNF330 GENE_SYMBOLS ACBD6,ACVR2A,AGFG1,ALG9,ALKBH7,ANKRD28,APOC2,APOOL,APPL2,ARL6,ATG5,ATP5MC3,BCCIP,LRMDA,HYPK,C1QA,C1QB,GLMP,CPLANE1,SMIM15,MALSU1,SWI5,CACNA1D,CBR1,CCDC115,CCDC90B,CCHCR1,CCNL1,CCT2,CCT3,CENPW,CEP152,CFDP1,CHST1,CKAP2L,CLEC5A,COPE,COQ3,CRELD1,CRLS1,CSDE1,CTPS1,CTSS,CUL7,CX3CL1,CXCL11,CYP2C18,CYP51A1,DDB1,DDX50,DNAL1,DOK2,DSTN,EIF3G,ELK3,ELP4,ERGIC3,ESF1,ESR1,ESYT2,ETF1,FADS1,FAIM,MTFR2,LRATD2,FARP1,FARSB,FDFT1,FDPS,FEZ2,FNDC4,FOS,FOSB,FZD5,GADD45G,GART,GBP4,GGT1,GLOD4,GPR84,GTF2E2,GTF2F2,GTF3C6,HAUS1,HDDC2,HIBADH,HSD17B10,HSPA14,HSPB1,IL1R2,IL1RN,IMMT,INTS2,ITGA5,KAT2A,PCLAF,CEP170B,KIAA1522,KY,LCORL,LLGL1,LOX,LRRC42,LRRC58,MAFF,MAP4,MB21D2,MCTS1,MICALL2,MLF2,MND1,MRPL18,MRPL21,MRPL40,MRPL42,MRPS26,MSH6,EEF1AKMT1,NAMPT,NCAPD2,NDUFA8,NEK2,NES,NFE2L2,NUCB2,NUCKS1,NUF2,P2RY12,PARVB,PDE7B,PEBP1,PFDN4,PFDN6,PGLS,PHF20,PLAUR,POFUT2,POLA2,PPP2R1A,PRDX3,PRIM2,PRKAR1A,PRODH,PSMA1,PSME1,PTRH1,PYCARD,RAB9A,RANBP1,RDX,RNASE4,RNF128,RNF19A,RPS19BP1,RPS27L,RPS8,RRBP1,S100A10,SAR1B,SCIN,SEC24A,SFXN1,SHB,SLC19A1,SLC25A1,SLC35B1,SLC6A8,SLC7A11,SMARCA4,SMYD2,SNRPF,SPCS1,SQSTM1,SRPRA,SSR3,SSX2IP,STMN1,TFEC,TIMP2,TMED1,TMEM214,TMLHE,TNFRSF9,TPST1,TRAPPC3,TRAPPC6A,TRIM32,TSC22D1,TSR1,TTK,TUBA1B,U2AF1,UCHL5,VPS53,WDHD1,WDR35,WDR43,WDR74,ZDHHC16,ZNF330 FOUNDER_NAMES