STANDARD_NAME GSE33292_DN3_THYMOCYTE_VS_TCELL_LYMPHOMA_FROM_TCF1_KO_UP SYSTEMATIC_NAME M9425 COLLECTION C7:IMMUNESIGDB MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/GSE33292_DN3_THYMOCYTE_VS_TCELL_LYMPHOMA_FROM_TCF1_KO_UP NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes up-regulated in TCF7 [GeneID=6932] knockout: DN3 thymocytes versus T cell lymphoma cells. DESCRIPTION_FULL TCF-1 is an HMG family transcription factor which is known to be critical for T cell development. We discovered that it has a unique role in suppressing malignant transformation of developing thymocytes at early stages. We identified ID2 and LEF-1 as key TCF-1 target genens in tumor suppression. We used microarrays to detect gene expression changes in WT and TCF-1 deficient DN3 thymocytes as well as T cell lymphoma cells developed in TCF-1 KO mice. PMID 23103132 GEOID GSE33292 AUTHORS Yu S,Zhou X,Steinke FC,Liu C,Chen SC,Zagorodna O,Jing X,Yokota Y,Meyerholz DK,Mullighan CG,Knudson CM,Zhao DM,Xue HH CONTRIBUTOR Jernej Godec CONTRIBUTOR_ORG Dana-Farber Cancer Institute EXACT_SOURCE GSE33292_2591_200_UP FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS 1110002N22Rik,1110004E09Rik,1200011M11Rik,2410076I21Rik,2810407C02Rik,4632404H12Rik,4921528O07Rik,5430411K18Rik,8430419L09Rik,9130011J15Rik,A630023P12Rik,AB041803,ABCB7,ABHD14A,ABI2,ADAM4,ADAMTSL2,AP4E1,ATR,B230307C23Rik,B3GNT8,BC016423,BC048403,BCL7A,BPNT1,BTF3L4,C920016K16Rik,CAMK1D,CAMK4,CCDC56,CCT6A,CDC25B,CDIPT,CDK5RAP1,CDV3,CELF1,CEP68,CHMP1B,CITED2,CLCC1,COPS6,CSPG5,CSTF3,D030016E14Rik,D17WSU92E,D19BWG1357E,DCAF8,DCUN1D1,DDX51,DIS3L,EEF1E1,EIF3G,EOMES,FAAH,FAM35A,FAM55C,FBXO28,FBXO3,FBXW7,FGFR1OP,FTH1,GALNT2,GCC2,GCLM,GM13949,GM1966,GM4063,GM4989,GM5215,GM9068,GPATCH4,GPR155,GTF2A2,GUF1,H2AFY,HAT1,HERC4,HIVEP2,HNRNPH2,HPRT,IFT52,IL1RL2,IL2,IQGAP2,ITGA2B,KAT2A,LARS,LATS1,LCMT2,LONP1,LRPPRC,MAN2A1,MAP2K1,MED6,METTL6,MKI67IP,MMAB,MRPS18C,MSH2,MTCH2,MYCBP2,NACA,NAMPT,NBAS,NDUFAF4,NFATC3,NGLY1,NIP7,NME1,NOL9,NOP16,NPRL3,NUP93,NXT2,OLFR221,PCF11,PCK1,PDCD2,PDK1,PI4KA,PNKD,PNPLA8,POLA1,PPHLN1,PRKD2,PRKX,PRPF31,PRR7,PSMA2,PSMD7,PSME4,PSMF1,PWP2,RAB3GAP1,RAP2A,RBM47,RBM8A,RC3H2,RCBTB1,RG9MTD1,RGS10,RIMBP3,RNF141,RNF160,RPN2,RPP38,RSU1,SDHD,SESN3,SH3BP5,SLC25A33,SLC39A14,SLC45A1,SLC6A20A,SMARCA5,SMN1,SNORD85,SNRPE,SNTB1,SPRYD4,SRM,SRPK1,SSBP2,SUGT1,SYNCRIP,TAF13,TAPT1,TARS,TCF20,TCP1,TEX9,TMEM71,TMEM87A,TOB1,TUBGCP6,TXN2,UBE2Q2,UFC1,UFM1,UGGT1,UIMC1,UNC119B,UQCC,URB1,UROS,USP32,VAPA,VKORC1,VPS45,WDR18,WDR43,XPO5,YTHDC1,ZBTB37,ZDHHC23,ZEB1,ZFAT,ZFP296,ZFP318,ZMPSTE24 GENE_SYMBOLS ,,,,,,,,,,,LINC-PINT,ABCB7,ABHD14A,ABI2,,ADAMTSL2,AP4E1,ATR,,B3GNT8,TASOR2,KICS2,BCL7A,BPNT1,BTF3L4,,CAMK1D,CAMK4,COA3,CCT6A,CDC25B,CDIPT,CDK5RAP1,CDV3,CELF1,CEP68,CHMP1B,CITED2,CLCC1,COPS6,CSPG5,CSTF3,,,,DCAF8,DCUN1D1,DDX51,DIS3L,EEF1E1,EIF3G,EOMES,FAAH,SHLD2,NXPE3,FBXO28,FBXO3,FBXW7,CEP43,FTH1,GALNT2,GCC2,GCLM,,,,,,,GPATCH4,GPR155,GTF2A2,GUF1,MACROH2A1,HAT1,HERC4,HIVEP2,HNRNPH2,HPRT1,IFT52,IL1RL2,IL2,IQGAP2,ITGA2B,KAT2A,LARS1,LATS1,LCMT2,LONP1,LRPPRC,MAN2A1,MAP2K1,MED6,METTL6,NIFK,MMAB,MRPS18C,MSH2,MTCH2,MYCBP2,NACA,NAMPT,NBAS,NDUFAF4,NFATC3,NGLY1,NIP7,NME1,NOL9,NOP16,NPRL3,NUP93,NXT2,,PCF11,PCK1,PDCD2,PDK1,PI4KA,PNKD,PNPLA8,POLA1,PPHLN1,PRKD2,PRKX,PRPF31,PRR7,PSMA2,PSMD7,PSME4,PSMF1,PWP2,RAB3GAP1,RAP2A,RBM47,RBM8A,RC3H2,RCBTB1,TRMT10C,RGS10,RIMBP3,RNF141,LTN1,RPN2,RPP38,RSU1,SDHD,SESN3,SH3BP5,SLC25A33,SLC39A14,SLC45A1,,SMARCA5,SMN1,,SNRPE,SNTB1,SPRYD4,SRM,SRPK1,SSBP2,SUGT1,SYNCRIP,TAF13,TAPT1,TARS1,TCF20,TCP1,TEX9,TMEM71,TMEM87A,TOB1,TUBGCP6,TXN2,UBE2Q2,UFC1,UFM1,UGGT1,UIMC1,UNC119B,UQCC1,URB1,UROS,USP32,VAPA,VKORC1,VPS45,WDR18,WDR43,XPO5,YTHDC1,ZBTB37,ZDHHC23,ZEB1,ZFAT,,ZNF318,ZMPSTE24 FOUNDER_NAMES