STANDARD_NAME PTEN_DN.V1_UP SYSTEMATIC_NAME M2787 COLLECTION C6 MSIGDB_URL https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/PTEN_DN.V1_UP NAMESPACE HUMAN_GENE_SYMBOL DESCRIPTION_BRIEF Genes up-regulated upon knockdown of PTEN [Gene ID=5728] by RNAi. DESCRIPTION_FULL A431, HCC827 and SKBR-3 cells were retrovirally and stably transduced with a small hairpin RNA targeting human PTEN. PTEN knockdown was confirmed at the protein level by western blot to be approximately 90%. PTEN-deficient sublines were named by adding the suffix PR(for PTEN RNAi) at the end of each of the parental cell line names. For example, PTEN deficient A431 cells are called A431-PR. RNA was extracted from each of the parental and PTEN-deificient lines. Each sample was done in duplicate (ie two chips per sample) for a total of twelve samples. PMID 17560336 GEOID GSE7562 AUTHORS Vivanco I,Palaskas N,Tran C,Finn SP,Getz G,Kennedy NJ,Jiao J,Rose J,Xie W,Loda M,Golub T,Mellinghoff IK,Davis RJ,Wu H,Sawyers CL CONTRIBUTOR Pablo Tamayo CONTRIBUTOR_ORG Broad Institute EXACT_SOURCE PTEN ko vs control; top 200 genes (diff. of means) FILTERED_BY_SIMILARITY EXTERNAL_NAMES_FOR_SIMILAR_TERMS EXTERNAL_DETAILS_URL SOURCE_MEMBERS ADRA2A,ADRA2C,ALOX5AP,ANKRD47,AQP1,ARHGDIG,ASPN,ATP6V1B1,AZU1,B3GAT1,BAI2,BCL2L14,BDNF,BMP10,BMP7,BMPR1B,C11orf16,C16orf5,C2,C5,C5orf13,C6orf137,C8orf17,C9orf26,CAMTA1,CAPN11,CCDC102B,CD1E,CDKL2,CDY1 /// CDY2A /// C,CELSR2,CHRNB1,CLEC1B,CLPS,CLTCL1,CNR2,CNTD2,COL15A1,COPG2,CPVL,CSH2,CYB5R2,CYP11B1,CYP26A1,CYP39A1,DCC,DDEF1IT1,DEFA5,DEFB1,DKFZp761H1710 /// LO,DMRT1,DOK5,DSG3,EDN1,EEF1A2,EFNB3,EMID2,EPHA4,EVI2A,FAM46C,FAM49A,FCER1G,FGF1,FLJ21963,FNBP1L,GABRA5,GADD45G,GAGE4 /// GAGE5 ///,GAL3ST1,GALR3,GDF10,GEMIN7,GGTL4,GJA12,GLT8D2,GNAO1,GPR30,H2AFY2,HHCM,HIST1H1T,HOXB2,HOXC8,HOXD1,HPR,HS3ST3B1,HSPA12A,HTN1,HTR1B,HTR2C,IFNA17,IFNA4,IFNA6,IGH@ /// IGHD /// IG,IL9R /// LOC645582 /,INHBB,INSL4,ISGF3G,ITGB2,JAG1,JAM3,KALRN,KCNH7,KCNQ4,KIAA0125,KIAA1305,KLK8,KLRC4,KRT6A /// KRT6C ///,LAMC3,LGALS13,LHX2,LOC51334,LOC642733,LOC644872,LOC653757,LPPR4,LRCH1,LRRC19,LYPD1,MAL,Man1a1,MAP3K5,MEFV,MIA,MMRN2,MOSC2,MSC,MSMB,MX2,MYBPC1,MYO15A,MYOT,NAP1L3,NEUROG1,NFASC,NFKBIL2,NGB,NR2F1,NTNG1,OR1A2,OR1E1 /// OR1E2,OSGIN1,P2RXL1,PAGE4,PARK2,PAX3,PCDHA5,PCDHB12,PDZK1,PFKFB4,PGR,PLCE1,PRDM14,PRG3,PRKAR2B,PSPH,PTPRJ,PTPRZ1,RARB,RASL12,RBP3,RGS2,RP4-724E16.2,RSAD2,RTP4,SCEL,SEPP1,SHC2,SIT1,SLC16A7,SLC26A4,SLC30A10,SLC6A1,SLC9A2,SMA3 /// SMA5,SORBS2,SPOCK1,SPOCK2,SPTA1,SRA1,SSBP2,TCF7L1,TCHH,TEC,TGFBR3,TLE1,TMLHE,TNFRSF7,TNNT3,TSP50,TSPAN2,TUBB2B,TUSC3,TXNIP,UCHL1,VCAM1,WISP2,ZBTB10,ZNF22,ZNF613 GENE_SYMBOLS ADRA2A,ADRA2C,ALOX5AP,KANK3,AQP1,ARHGDIG,ASPN,ATP6V1B1,AZU1,B3GAT1,ADGRB2,BCL2L14,BDNF,BMP10,BMP7,BMPR1B,C11orf16,CDIP1,C2,C5,NREP,TMEM151B,C8orf17,IL33,CAMTA1,CAPN11,CCDC102B,CD1E,CDKL2,,CELSR2,CHRNB1,CLEC1B,CLPS,CLTCL1,CNR2,CCNP,COL15A1,COPG2,CPVL,CSH2,CYB5R2,CYP11B1,CYP26A1,CYP39A1,DCC,,DEFA5,DEFB1,,DMRT1,DOK5,DSG3,EDN1,EEF1A2,EFNB3,COL26A1,EPHA4,EVI2A,TENT5C,CYRIA,FCER1G,FGF1,ACSS3,FNBP1L,GABRA5,GADD45G,,GAL3ST1,GALR3,GDF10,GEMIN7,GGTLC2,GJC2,GLT8D2,GNAO1,GPER1,MACROH2A2,,H1-6,HOXB2,HOXC8,HOXD1,HPR,HS3ST3B1,HSPA12A,HTN1,HTR1B,HTR2C,IFNA17,IFNA4,IFNA6,,,INHBB,INSL4,IRF9,ITGB2,JAG1,JAM3,KALRN,KCNH7,KCNQ4,FAM30A,NYNRIN,KLK8,KLRC4,,LAMC3,LGALS13,LHX2,PRR16,,,KIR2DL4,PLPPR4,LRCH1,LRRC19,LYPD1,MAL,MAP3K5,MEFV,MIA,MMRN2,MTARC2,MSC,MSMB,MX2,MYBPC1,MYO15A,MYOT,,NAP1L3,NEUROG1,NFASC,TONSL,NGB,NR2F1,NTNG1,OR1A2,,OSGIN1,P2RX6,PAGE4,PRKN,PAX3,PCDHA5,PCDHB12,PDZK1,PFKFB4,PGR,PLCE1,PRDM14,PRG3,PRKAR2B,PSPH,PTPRJ,PTPRZ1,RARB,RASL12,RBP3,RGS2,,RSAD2,RTP4,SCEL,SELENOP,SHC2,SIT1,SLC16A7,SLC26A4,SLC30A10,SLC6A1,SLC9A2,,SORBS2,SPOCK1,SPOCK2,SPTA1,SRA1,SSBP2,TCF7L1,TCHH,TEC,TGFBR3,TLE1,TMLHE,CD27,TNNT3,PRSS50,TSPAN2,TUBB2B,TUSC3,TXNIP,UCHL1,VCAM1,CCN5,ZBTB10,ZNF22,ZNF613 FOUNDER_NAMES