Human Gene Set: GSE12707_AT16L1_HYPOMORPH_VS_WT_THYMUS_DN


Standard name GSE12707_AT16L1_HYPOMORPH_VS_WT_THYMUS_DN
Systematic name M434
Brief description Genes down-regulated in tymocytes: mutant (hypomorph) ATG16L1 [GeneID=55054] versus wildtype.
Full description or abstract The aim of this study is to survey global gene expression of total thymocytes from wild-type mice and Atg16l1 mutant (hypomorph) mice.
Collection C7: Immunologic Signature
      IMMUNESIGDB: ImmuneSigDB
Source publication Pubmed 18849966   Authors: Cadwell K,Liu JY,Brown SL,Miyoshi H,Loh J,Lennerz JK,Kishi C,Kc W,Carrero JA,Hunt S,Stone CD,Brunt EM,Xavier RJ,Sleckman BP,Li E,Mizushima N,Stappenbeck TS,Virgin HW 4th
Exact source GSE12707_2700_200_DN
Related gene sets (show 3 additional gene sets from the source publication)

(show 101 gene sets from any of these authors)
External links
Filtered by similarity ?
Source species Mus musculus
Contributed by Jernej Godec (Dana-Farber Cancer Institute)
Source platform or
identifier namespace		 HUMAN_GENE_SYMBOL
Dataset references (show 1 datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)

Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 130 genes
Gene families ? Categorize these 130 genes by gene family
Show members (show 200 source identifiers mapped to 130 genes)
Version history 7.3: Moved to ImmuneSigDB sub-collection.

See MSigDB license terms here. Please note that certain gene sets have special access terms.