Human Gene Set: HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY

GSEA and MSigDB Need Your Support

We are preparing a grant proposal to NCI's Information Technology for Cancer Research program for the continued funding of GSEA and MSigDB. Click here to learn how you can help. (show)


Standard name HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
Systematic name M5938
Brief description Genes up-regulated by reactive oxigen species (ROS).
Full description or abstract  
Collection H: Hallmark
Source publication Pubmed 26771021   Authors: Liberzon A,Birger C,Thorvaldsdóttir H,Ghandi M,Mesirov JP,Tamayo P
Exact source  
Related gene sets (show 49 additional gene sets from the source publication)

(show 74 gene sets from the same authors)

(show 13 founder gene sets for this hallmark gene set)
External links  
Filtered by similarity ?
Organism Homo sapiens
Contributed by Arthur Liberzon (MSigDB Team)
Source platform HUMAN_GENE_SYMBOL
Dataset references (show 4 hallmark refinement datasets)

(show 2 hallmark validation datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 49 genes
Gene families ? Categorize these 49 genes by gene family
Show members (show 49 members mapped to 49 genes)
Version history 7.0: Renamed from HALLMARK_REACTIVE_OXIGEN_SPECIES_PATHWAY

See MSigDB license terms here. Please note that certain gene sets have special access terms.