login
register
GSEA Home
Downloads
Molecular Signatures Database
Documentation
Contact
Team
MSigDB Home
Human Collections
About
Browse
Search
Investigate
Gene Families
Mouse Collections
About
Browse
Search
Investigate
Help
Human Gene Set: HP_MEDIAN_CLEFT_LIP_AND_PALATE
Standard name
HP_MEDIAN_CLEFT_LIP_AND_PALATE
Systematic name
M37253
Brief description
Median cleft lip and palate
Full description or abstract
Cleft lip or palate affecting the midline region of the palate. [https://orcid.org/0009-0006-4530-3154]
Collection
C5: Ontology
HPO: Human Phenotype Ontology
Source publication
Exact source
HP:0008501
Related gene sets
External links
https://hpo.jax.org/app/browse/term/HP:0008501
Filtered by similarity
?
Source species
Homo sapiens
Contributed by
Human Phenotype Ontology Group (The Jackson Laboratory (JAX))
Source platform or
identifier namespace
Human_NCBI_Gene_ID
Dataset references
Download gene set
format:
grp
|
gmt
|
xml
|
json
|
TSV metadata
Compute overlaps
?
(
show
collections to investigate for overlap with this gene set)
H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
(
Please note that clustering takes a few seconds
)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 16 genes
Gene families
?
Categorize
these 16 genes by gene family
Show members
(
show
16 source identifiers mapped to 16 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
1855
1855
DVL1
dishevelled segment polarity protein 1 [Sourc...
1857
1857
DVL3
dishevelled segment polarity protein 3 [Sourc...
2535
2535
FZD2
frizzled class receptor 2 [Source:HGNC Symbol...
2736
2736
GLI2
GLI family zinc finger 2 [Source:HGNC Symbol;...
3170
3170
FOXA2
forkhead box A2 [Source:HGNC Symbol;Acc:HGNC:...
5015
5015
OTX2
orthodenticle homeobox 2 [Source:HGNC Symbol;...
5449
5449
POU1F1
POU class 1 homeobox 1 [Source:HGNC Symbol;Ac...
5626
5626
PROP1
PROP paired-like homeobox 1 [Source:HGNC Symb...
56975
56975
FAM20C
FAM20C golgi associated secretory pathway kin...
5727
5727
PTCH1
patched 1 [Source:HGNC Symbol;Acc:HGNC:9585]
6496
6496
SIX3
SIX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:1...
7050
7050
TGIF1
TGFB induced factor homeobox 1 [Source:HGNC S...
7474
7474
WNT5A
Wnt family member 5A [Source:HGNC Symbol;Acc:...
81031
81031
SLC2A10
solute carrier family 2 member 10 [Source:HGN...
8820
8820
HESX1
HESX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:...
89884
89884
LHX4
LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:2...
Version history
2023.1.Hs: Updated to HPO Release 2023-01-27.
See
MSigDB license terms here
. Please note that certain gene sets have special access terms.