Standard name |
SU_PLACENTA |
Systematic name |
M6349 |
Brief description |
Genes up-regulated specifically in human placenta. |
Full description or abstract |
High-throughput gene expression profiling has become an important tool for investigating transcriptional activity in a variety of biological samples. To date, the vast majority of these experiments have focused on specific biological processes and perturbations. Here, we have generated and analyzed gene expression from a set of samples spanning a broad range of biological conditions. Specifically, we profiled gene expression from 91 human and mouse samples across a diverse array of tissues, organs, and cell lines. Because these samples predominantly come from the normal physiological state in the human and mouse, this dataset represents a preliminary, but substantial, description of the normal mammalian transcriptome. We have used this dataset to illustrate methods of mining these data, and to reveal insights into molecular and physiological gene function, mechanisms of transcriptional regulation, disease etiology, and comparative genomics. Finally, to allow the scientific community to use this resource, we have built a free and publicly accessible website (http://expression.gnf.org) that integrates data visualization and curation of current gene annotations. |
Collection |
C2: Curated CGP: Chemical and Genetic Perturbations |
Source publication |
Pubmed 11904358 Authors: Su AI,Cooke MP,Ching KA,Hakak Y,Walker JR,Wiltshire T,Orth AP,Vega RG,Sapinoso LM,Moqrich A,Patapoutian A,Hampton GM,Schultz PG,Hogenesch JB |
Exact source |
Table 1S: Max Tissue=Placenta |
Related gene sets |
(show 6 additional gene sets from the source publication)
(show 36 gene sets from the same authors)
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External links |
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Filtered by similarity ?
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Source species |
Homo sapiens |
Contributed by |
John Newman (University of Washington) |
Source platform or identifier namespace |
AFFY_HG_U95 |
Dataset references |
(show 1 datasets)
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Download gene set |
format: grp | gmt | xml | json | TSV metadata |
Compute overlaps ? |
(show collections to investigate for overlap with this gene set)
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Compendia expression profiles ? |
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
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Advanced query |
Further investigate
these 30 genes
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Gene families ? |
Categorize these
30 genes by gene family
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Show members |
(show 31 source identifiers mapped to 30 genes)
Source Id |
NCBI (Entrez) Gene Id |
Gene Symbol |
Gene Description |
1545_g_at |
2321 |
FLT1 |
fms related receptor tyrosine kinas... |
1619_g_at |
1588 |
CYP19A1 |
cytochrome P450 family 19 subfamily... |
1645_at |
3814 |
KISS1 |
KiSS-1 metastasis suppressor [Sourc... |
2074_at |
2702 |
GJA5 |
gap junction protein alpha 5 [Sourc... |
31588_at |
203510 |
HMGB3P30 |
high mobility group box 3 pseudogen... |
31598_s_at |
2582 |
GALE |
UDP-galactose-4-epimerase [Source:H... |
32303_at |
2117 |
ETV3 |
ETS variant transcription factor 3 ... |
33046_f_at |
2016 |
EMX1 |
empty spiracles homeobox 1 [Source:... |
33620_at |
3213 |
HOXB3 |
homeobox B3 [Source:HGNC Symbol;Acc... |
33714_at |
3149 |
HMGB3 |
high mobility group box 3 [Source:H... |
34219_at |
3641 |
INSL4 |
insulin like 4 [Source:HGNC Symbol;... |
34939_r_at |
100130449 |
GPC1-AS1 |
GPC1 antisense RNA 1 [Source:HGNC S... |
35491_at |
4109 |
MAGEA10 |
MAGE family member A10 [Source:HGNC... |
35935_at |
1375 |
CPT1B |
carnitine palmitoyltransferase 1B [... |
36000_at |
1388 |
ATF6B |
activating transcription factor 6 b... |
37093_at |
8909 |
ENDOU |
endonuclease, poly(U) specific [Sou... |
37185_at |
5055 |
SERPINB2 |
serpin family B member 2 [Source:HG... |
37327_at |
1956 |
EGFR |
epidermal growth factor receptor [S... |
38180_f_at |
5675 |
PSG6 |
pregnancy specific beta-1-glycoprot... |
38249_at |
51442 |
VGLL1 |
vestigial like family member 1 [Sou... |
38770_at |
8038 |
ADAM12 |
ADAM metallopeptidase domain 12 [So... |
39151_at |
60676 |
PAPPA2 |
pappalysin 2 [Source:HGNC Symbol;Ac... |
39314_at |
93 |
ACVR2B |
activin A receptor type 2B [Source:... |
39454_f_at |
3196 |
TLX2 |
T cell leukemia homeobox 2 [Source:... |
39622_at |
8521 |
GCM1 |
glial cells missing transcription f... |
40237_at |
7262 |
PHLDA2 |
pleckstrin homology like domain fam... |
40733_f_at |
4488 |
MSX2 |
msh homeobox 2 [Source:HGNC Symbol;... |
40761_at |
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40892_s_at |
55558 |
PLXNA3 |
plexin A3 [Source:HGNC Symbol;Acc:H... |
41087_at |
1749 |
DLX5 |
distal-less homeobox 5 [Source:HGNC... |
41870_at |
10630 |
PDPN |
podoplanin [Source:HGNC Symbol;Acc:... |
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Version history |
3.0: Renamed from HUMAN_TISSUE_PLACENTA
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A big thank you to everyone who responded to our request for emails of support for our grant application resubmission.
Reading them made us feel so appreciated and valued by all of you.
We hope we can continue to bring you GSEA/MSigDB in the years to come.
-The GSEA/MSigDB Team