Mouse Gene Set: BIOCARTA_TCAPOPTOSIS_PATHWAY
                
               
            
          
  
 
 
 
 
  
    For the Human gene set with the same name, see BIOCARTA_TCAPOPTOSIS_PATHWAY  
  
  
    Standard name 
    BIOCARTA_TCAPOPTOSIS_PATHWAY 
   
  
    Systematic name 
    MM1405 
   
  
    Brief description 
    HIV Induced T Cell Apoptosis 
   
  
    Full description or abstract 
    HIV infection is associated with immunosuppression caused by a dramatic reduction in the helper T cell population. The loss of helper T cells may be caused by HIV-induced apoptosis of both infected and uninfected helper T cells. HIV uses the CCR5 chemokine receptor as a coreceptor for macrophage cell entry and upregulates fas-ligand on these cells. CD4 on helper T cells is essential for viral cell entry and infection. Cross-linking of CD4 on the T cell surface may be involved in upregulation of Fas and sensitization of T cells to apoptosis induced by the Fas/Fas-ligand interaction. 
   
  
    Collection 
    M2: Curated       CP: Canonical Pathways             CP:BIOCARTA: BioCarta Pathways 
   
  
    Source publication 
      
   
  
    Exact source 
      
   
  
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    External links 
    https://data.broadinstitute.org/gsea-msigdb/msigdb/biocarta/mouse/m_tcapoptosisPathway.gif  
   
  
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    Source species 
    Mus musculus 
   
  
    Contributed by 
    BioCarta 
   
  
    Source platform or identifier namespace 
    MOUSE_SEQ_ACCESSION 
   
  
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        (show  10 source identifiers mapped to 9 genes)
       
       
      
        
        
          
            Source Id 
            NCBI (Entrez) Gene Id 
            Gene Symbol 
            Gene Description 
           
          
            
              AK080019 
              12503  
              Cd247  
              CD247 antigen [Source:MGI Symbol;Acc:MGI... 
             
          
            
              NM_001146708 
              14102  
              Fas  
              Fas cell surface death receptor [Source:... 
             
          
            
              NM_001205243 
              14103  
              Fasl  
              Fas ligand [Source:MGI Symbol;Acc:MGI:99... 
             
          
            
              NM_007642 
              12487  
              Cd28  
              CD28 antigen [Source:MGI Symbol;Acc:MGI:... 
             
          
            
              NM_007648 
              12501  
              Cd3e  
              CD3 antigen, epsilon polypeptide [Source... 
             
          
            
              NM_009850 
              12502  
              Cd3g  
              CD3 antigen, gamma polypeptide [Source:M... 
             
          
            
              NM_009917 
              12774  
              Ccr5  
              C-C motif chemokine receptor 5 [Source:M... 
             
          
            
              NM_013487 
              12500  
              Cd3d  
              CD3 antigen, delta polypeptide [Source:M... 
             
          
            
              NM_013488 
              12504  
              Cd4  
              CD4 antigen [Source:MGI Symbol;Acc:MGI:8... 
             
          
            
              NM_031162 
              12503  
              Cd247  
              CD247 antigen [Source:MGI Symbol;Acc:MGI... 
             
          
        
       
     
   
  
    Version history 
    
      
        
        2022.1.Mm: First Introduced.
        
      
            
      
     
   
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