Mouse Gene Set: CUI_CDC2_TNFA_RESPONSE_UP


Standard name CUI_CDC2_TNFA_RESPONSE_UP
Systematic name MM18550
Brief description Genes positively differentially expressed in cell type: cDC2 (conventional dendritic cell type 2) upon treatment with cytokine: TNF-α in mouse lymph nodes in vivo.
Full description or abstract Cytokines mediate cell-cell communication in the immune system and represent important therapeutic targets. A myriad of studies have highlighted their central role in immune function, yet we lack a global view of the cellular responses of each immune cell type to each cytokine. To address this gap, the authors created the Immune Dictionary, a compendium of single-cell transcriptomic profiles of more than 17 immune cell types in response to each of 86 cytokines (>1,400 cytokine-cell type combinations) in mouse lymph nodes in vivo. A cytokine-centric view of the dictionary revealed that most cytokines induce highly cell-type-specific responses. For example, the inflammatory cytokine interleukin-1β induces distinct gene programmes in almost every cell type. A cell-type-centric view of the dictionary identified more than 66 cytokine-driven cellular polarization states across immune cell types, including previously uncharacterized states such as an interleukin-18-induced polyfunctional natural killer cell state.
Collection M7: Immunologic Signature
Source publication Pubmed 38057668   Authors: Cui A,Huang T,Li S,Ma A,Pérez JL,Sander C,Keskin DB,Wu CJ,Fraenkel E,Hacohen N
Exact source Supplementary Table 3 Cytokine signatures: DEGs in response to each cytokine treatment in each cell type. 41586_2023_6816_MOESM5_ESM. Genes annotated with Celltype: cDC2 and Cytokine: TNF-α with a Log2FC >0
Related gene sets (show 786 additional gene sets from the source publication)

(show 7 gene sets from any of these authors)
External links www.immune-dictionary.org
Filtered by similarity ?
Source species Mus musculus
Contributed by Anthony Castanza (MSigDB Team)
Source platform or
identifier namespace		 MOUSE_GENE_SYMBOL
Dataset references (show 1 datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
Mouse Transcriptomic BodyMap compendium

Legacy heatmaps (PNG)
Mouse Transcriptomic BodyMap compendium
Advanced query Further investigate these 542 genes
Show members (show 542 source identifiers mapped to 542 genes)
Version history 2025.1.Mm: First Introduced.

See MSigDB license terms here. Please note that certain gene sets have special access terms.