Browse Mouse Gene Sets

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[about the MSigDB Mouse collections]

  • MH (orthology-mapped hallmark gene sets, 50 gene sets)
  • M1 (positional gene sets, 341 gene sets)
  • M2 (curated gene sets, 2619 gene sets)
    • CGP (chemical and genetic pertubations, 932 gene sets)
    • CP (canonical pathways, 1687 gene sets)
  • M3 (regulatory gene sets, 2042 gene sets)
    • GTRD (GTRD transcription factor targets, 273 gene sets)
    • MIRDB (miRDB microRNA targets, 1769 gene sets)
  • M5 (ontology gene sets, 10652 gene sets)
    • GO (Gene Ontology, 10560 gene sets)
      • GO:BP (GO biological process, 7775 gene sets)
      • GO:CC (GO cellular component, 1039 gene sets)
      • GO:MF (GO molecular function, 1746 gene sets)
    • MPT (Mouse Phenotype Ontology MP Tumor, 92 gene sets)
  • M8 (cell type signature gene sets, 214 gene sets)

Click on a gene set name to view its gene set page.

HALLMARK_ADIPOGENESIS
HALLMARK_ALLOGRAFT_REJECTION
HALLMARK_ANDROGEN_RESPONSE
HALLMARK_ANGIOGENESIS
HALLMARK_APICAL_JUNCTION
HALLMARK_APICAL_SURFACE
HALLMARK_APOPTOSIS
HALLMARK_BILE_ACID_METABOLISM
HALLMARK_CHOLESTEROL_HOMEOSTASIS
HALLMARK_COAGULATION
HALLMARK_COMPLEMENT
HALLMARK_DNA_REPAIR
HALLMARK_E2F_TARGETS
HALLMARK_EPITHELIAL_MESENCHYMAL_TRA
NSITION

HALLMARK_ESTROGEN_RESPONSE_EARLY
HALLMARK_ESTROGEN_RESPONSE_LATE
HALLMARK_FATTY_ACID_METABOLISM
HALLMARK_G2M_CHECKPOINT
HALLMARK_GLYCOLYSIS
HALLMARK_HEDGEHOG_SIGNALING
HALLMARK_HEME_METABOLISM
HALLMARK_HYPOXIA
HALLMARK_IL2_STAT5_SIGNALING
HALLMARK_IL6_JAK_STAT3_SIGNALING
HALLMARK_INFLAMMATORY_RESPONSE
HALLMARK_INTERFERON_ALPHA_RESPONSE
HALLMARK_INTERFERON_GAMMA_RESPONSE
HALLMARK_KRAS_SIGNALING_DN
HALLMARK_KRAS_SIGNALING_UP
HALLMARK_MITOTIC_SPINDLE
HALLMARK_MTORC1_SIGNALING
HALLMARK_MYC_TARGETS_V1
HALLMARK_MYC_TARGETS_V2
HALLMARK_MYOGENESIS
HALLMARK_NOTCH_SIGNALING
HALLMARK_OXIDATIVE_PHOSPHORYLATION
HALLMARK_P53_PATHWAY
HALLMARK_PANCREAS_BETA_CELLS
HALLMARK_PEROXISOME
HALLMARK_PI3K_AKT_MTOR_SIGNALING
HALLMARK_PROTEIN_SECRETION
HALLMARK_REACTIVE_OXIGEN_SPECIES_PA
THWAY

HALLMARK_SPERMATOGENESIS
HALLMARK_TGF_BETA_SIGNALING
HALLMARK_TNFA_SIGNALING_VIA_NFKB
HALLMARK_UNFOLDED_PROTEIN_RESPONSE
HALLMARK_UV_RESPONSE_DN
HALLMARK_UV_RESPONSE_UP
HALLMARK_WNT_BETA_CATENIN_SIGNALING
HALLMARK_XENOBIOTIC_METABOLISM