GSEA Report for Dataset Gender_collapsed.gct

Enrichment in phenotype: MALE (15 samples)

• 147 / 318 gene sets had enrichment in phenotype MALE
• 4 gene set(s) are significant at nominal pvalue < 5%
• 1 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Enrichment in phenotype: FEMALE (17 samples)

• 171 / 318 gene sets had enrichment in phenotype FEMALE
• 9 gene set(s) are significant at nominal pvalue < 5%
• 2 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Gene markers for the MALE versus FEMALE comparison

• The dataset had 15056 features (genes)
• # of markers for phenotype MALE: 7842 (52.1% ) with correlation area 55.0%
• # of markers for phenotype FEMALE: 7214 (47.9% ) with correlation area 45.0%
• Detailed rank ordered gene list for all features in the dataset
• Heat map and gene list correlation profile for all features in the dataset

Advanced statistics and plots

• Gene set size filters (min=15, max=500) resulted in filtering out 204 / 522 gene sets
• The remaining 318 gene sets were used in the analysis. List of gene sets and their sizes (restricted to probes in the specified dataset)
• Enrichment results and additional statistics for phenotype MALE (excel, html)
• Enrichment results and additional statistics for phenotype FEMALE (excel, html)
• Plot of p-values vs. NES
• Plot of global observed and null densities (after area normalization)
• Global ES histogram

Other

• Parameters used for this analysis