Gene Set: BERGER_MBD2_TARGETS

Standard name BERGER_MBD2_TARGETS
Systematic name M2296
Brief description Genes strongly up-regulated in colon tissue upon MBD2 [GeneID=8932] knockout.
Full description or abstract Gene expression in the gut is segmentally regulated, but little is known of the molecular origin of patterning. Analysis of gene expression in colons from mice lacking the methyl-CpG binding repressor MBD2 revealed frequent activation of genes that are normally only expressed in the exocrine pancreas and duodenum. Reduced DNA methylation activated the same gene set in the colon. No significant differences in DNA methylation between the colon and duodenum were detected, but MBD2 was significantly more abundant in the colon. The relevance of MBD2 concentration was tested in a human colon cancer cell line. Depletion of MBD2 was again found to activate exocrine pancreatic genes. Gene activation in this cell culture model was accompanied by loss of promoter-bound MBD2 and increased histone acetylation. The results suggest that modulation of MBD2 during gut development establishes a region-specific gene expression pattern that is essential for establishing correct segmental character.
Collection C2: curated gene sets
      CGP: chemical and genetic perturbations
Source publication Pubmed 17353267   Authors: Berger J,Sansom O,Clarke A,Bird A
Exact source Table 1
Related gene sets (show 4 gene sets from the same authors)
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Organism Mus musculus
Contributed by Arthur Liberzon (MSigDB Team)
Source platform MOUSE_SEQ_ACCESSION
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Version history 3.1: First introduced

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