Browse Gene Sets

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[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 299 gene sets)
  • C2 (curated gene sets, 5529 gene sets)
    • CGP (chemical and genetic perturbations, 3297 gene sets)
    • CP (Canonical pathways, 2232 gene sets)
      • CP:BIOCARTA (BioCarta gene sets, 289 gene sets)
      • CP:KEGG (KEGG gene sets, 186 gene sets)
      • CP:PID (PID gene sets, 196 gene sets)
      • CP:REACTOME (Reactome gene sets, 1532 gene sets)
  • C3 (regulatory target gene sets, 3735 gene sets)
    • MIR (microRNA targets, 2598 gene sets)
    • TFT (All transcription factor targets, 1137 gene sets)
      • TFT:GTRD (GTRD transcription factor targets, 526 gene sets)
      • TFT:TFT_Legacy (Legacy transcription factor targets, 611 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 10192 gene sets)
    • BP (GO biological process, 7530 gene sets)
    • CC (GO cellular component, 999 gene sets)
    • MF (GO molecular function, 1663 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Click on a gene set name to view its gene set page.

BIOCARTA_41BB_PATHWAY
BIOCARTA_ACE2_PATHWAY
BIOCARTA_ACETAMINOPHEN_PATHWAY
BIOCARTA_ACH_PATHWAY
BIOCARTA_ACTINY_PATHWAY
BIOCARTA_AGPCR_PATHWAY
BIOCARTA_AGR_PATHWAY
BIOCARTA_AHSP_PATHWAY
BIOCARTA_AKAP13_PATHWAY
BIOCARTA_AKAP95_PATHWAY
BIOCARTA_AKAPCENTROSOME_PATHWAY
BIOCARTA_AKT_PATHWAY
BIOCARTA_ALK_PATHWAY
BIOCARTA_ALTERNATIVE_PATHWAY
BIOCARTA_AMAN_PATHWAY
BIOCARTA_AMI_PATHWAY
BIOCARTA_ARAP_PATHWAY
BIOCARTA_ARENRF2_PATHWAY
BIOCARTA_ARF_PATHWAY
BIOCARTA_ASBCELL_PATHWAY
BIOCARTA_AT1R_PATHWAY
BIOCARTA_ATM_PATHWAY
BIOCARTA_ATRBRCA_PATHWAY
BIOCARTA_BAD_PATHWAY
BIOCARTA_BARD1_PATHWAY
BIOCARTA_BARR_MAPK_PATHWAY
BIOCARTA_BARRESTIN_PATHWAY
BIOCARTA_BARRESTIN_SRC_PATHWAY
BIOCARTA_BBCELL_PATHWAY
BIOCARTA_BCELLSURVIVAL_PATHWAY
BIOCARTA_BCR_PATHWAY
BIOCARTA_BIOPEPTIDES_PATHWAY
BIOCARTA_BLYMPHOCYTE_PATHWAY
BIOCARTA_BOTULIN_PATHWAY
BIOCARTA_BTG2_PATHWAY
BIOCARTA_CACAM_PATHWAY
BIOCARTA_CALCINEURIN_PATHWAY
BIOCARTA_CARDIACEGF_PATHWAY
BIOCARTA_CARM1_PATHWAY
BIOCARTA_CARM_ER_PATHWAY
BIOCARTA_CASPASE_PATHWAY
BIOCARTA_CB1R_PATHWAY
BIOCARTA_CBL_PATHWAY
BIOCARTA_CCR3_PATHWAY
BIOCARTA_CCR5_PATHWAY
BIOCARTA_CD40_PATHWAY
BIOCARTA_CDC25_PATHWAY
BIOCARTA_CDC42RAC_PATHWAY
BIOCARTA_CDK5_PATHWAY
BIOCARTA_CDMAC_PATHWAY
BIOCARTA_CELL2CELL_PATHWAY
BIOCARTA_CELLCYCLE_PATHWAY
BIOCARTA_CERAMIDE_PATHWAY
BIOCARTA_CFTR_PATHWAY
BIOCARTA_CHEMICAL_PATHWAY
BIOCARTA_CHREBP_PATHWAY
BIOCARTA_CIRCADIAN_PATHWAY
BIOCARTA_CK1_PATHWAY
BIOCARTA_CLASSIC_PATHWAY
BIOCARTA_COMP_PATHWAY
BIOCARTA_CPSF_PATHWAY
BIOCARTA_CREB_PATHWAY
BIOCARTA_CREM_PATHWAY
BIOCARTA_CSK_PATHWAY
BIOCARTA_CTBP1_PATHWAY
BIOCARTA_CTCF_PATHWAY
BIOCARTA_CTL_PATHWAY
BIOCARTA_CTLA4_PATHWAY
BIOCARTA_CXCR4_PATHWAY
BIOCARTA_CYTOKINE_PATHWAY
BIOCARTA_D4GDI_PATHWAY
BIOCARTA_DC_PATHWAY
BIOCARTA_DEATH_PATHWAY
BIOCARTA_DICER_PATHWAY
BIOCARTA_DNAFRAGMENT_PATHWAY
BIOCARTA_DREAM_PATHWAY
BIOCARTA_DSP_PATHWAY
BIOCARTA_ECM_PATHWAY
BIOCARTA_EDG1_PATHWAY
BIOCARTA_EEA1_PATHWAY
BIOCARTA_EFP_PATHWAY
BIOCARTA_EGF_PATHWAY
BIOCARTA_EGFR_SMRTE_PATHWAY
BIOCARTA_EICOSANOID_PATHWAY
BIOCARTA_EIF2_PATHWAY
BIOCARTA_EIF4_PATHWAY
BIOCARTA_EIF_PATHWAY
BIOCARTA_EOSINOPHILS_PATHWAY
BIOCARTA_EPHA4_PATHWAY
BIOCARTA_EPO_PATHWAY
BIOCARTA_EPONFKB_PATHWAY
BIOCARTA_ERAD_PATHWAY
BIOCARTA_ERBB3_PATHWAY
BIOCARTA_ERBB4_PATHWAY
BIOCARTA_ERK5_PATHWAY
BIOCARTA_ERK_PATHWAY
BIOCARTA_ERYTH_PATHWAY
BIOCARTA_ETC_PATHWAY
BIOCARTA_ETS_PATHWAY
BIOCARTA_EXTRINSIC_PATHWAY
BIOCARTA_FAS_PATHWAY
BIOCARTA_FBW7_PATHWAY
BIOCARTA_FCER1_PATHWAY
BIOCARTA_FIBRINOLYSIS_PATHWAY
BIOCARTA_FLUMAZENIL_PATHWAY
BIOCARTA_FMLP_PATHWAY
BIOCARTA_FOSB_PATHWAY
BIOCARTA_FREE_PATHWAY
BIOCARTA_FXR_PATHWAY
BIOCARTA_G1_PATHWAY
BIOCARTA_G2_PATHWAY
BIOCARTA_GABA_PATHWAY
BIOCARTA_GATA3_PATHWAY
BIOCARTA_GCR_PATHWAY
BIOCARTA_GH_PATHWAY
BIOCARTA_GHRELIN_PATHWAY
BIOCARTA_GLEEVEC_PATHWAY
BIOCARTA_GPCR_PATHWAY
BIOCARTA_GRANULOCYTES_PATHWAY
BIOCARTA_GSK3_PATHWAY
BIOCARTA_HBX_PATHWAY
BIOCARTA_HCMV_PATHWAY
BIOCARTA_HDAC_PATHWAY
BIOCARTA_HER2_PATHWAY
BIOCARTA_HES_PATHWAY
BIOCARTA_HIF_PATHWAY
BIOCARTA_HIVNEF_PATHWAY
BIOCARTA_HSP27_PATHWAY
BIOCARTA_HSWI_SNF_PATHWAY
BIOCARTA_IFNA_PATHWAY
BIOCARTA_IFNG_PATHWAY
BIOCARTA_IGF1_PATHWAY
BIOCARTA_IGF1MTOR_PATHWAY
BIOCARTA_IGF1R_PATHWAY
BIOCARTA_IL10_PATHWAY
BIOCARTA_IL12_PATHWAY
BIOCARTA_IL17_PATHWAY
BIOCARTA_IL1R_PATHWAY
BIOCARTA_IL22BP_PATHWAY
BIOCARTA_IL2_PATHWAY
BIOCARTA_IL2RB_PATHWAY
BIOCARTA_IL3_PATHWAY
BIOCARTA_IL4_PATHWAY
BIOCARTA_IL5_PATHWAY
BIOCARTA_IL6_PATHWAY
BIOCARTA_IL7_PATHWAY
BIOCARTA_INFLAM_PATHWAY
BIOCARTA_INSULIN_PATHWAY
BIOCARTA_INTEGRIN_PATHWAY
BIOCARTA_INTRINSIC_PATHWAY
BIOCARTA_ION_PATHWAY
BIOCARTA_IRES_PATHWAY
BIOCARTA_KERATINOCYTE_PATHWAY
BIOCARTA_LAIR_PATHWAY
BIOCARTA_LDL_PATHWAY
BIOCARTA_LECTIN_PATHWAY
BIOCARTA_LEPTIN_PATHWAY
BIOCARTA_LIS1_PATHWAY
BIOCARTA_LONGEVITY_PATHWAY
BIOCARTA_LYM_PATHWAY
BIOCARTA_LYMPHOCYTE_PATHWAY
BIOCARTA_MAL_PATHWAY
BIOCARTA_MALATEX_PATHWAY
BIOCARTA_MAPK_PATHWAY
BIOCARTA_MCALPAIN_PATHWAY
BIOCARTA_MCM_PATHWAY
BIOCARTA_MEF2D_PATHWAY
BIOCARTA_MELANOCYTE_PATHWAY
BIOCARTA_MET_PATHWAY
BIOCARTA_MHC_PATHWAY
BIOCARTA_MITOCHONDRIA_PATHWAY
BIOCARTA_MITR_PATHWAY
BIOCARTA_MONOCYTE_PATHWAY
BIOCARTA_MPR_PATHWAY
BIOCARTA_MRP_PATHWAY
BIOCARTA_MSP_PATHWAY
BIOCARTA_MTA3_PATHWAY
BIOCARTA_MTOR_PATHWAY
BIOCARTA_MYOSIN_PATHWAY
BIOCARTA_NDKDYNAMIN_PATHWAY
BIOCARTA_NEUTROPHIL_PATHWAY
BIOCARTA_NFAT_PATHWAY
BIOCARTA_NFKB_PATHWAY
BIOCARTA_NGF_PATHWAY
BIOCARTA_NKCELLS_PATHWAY
BIOCARTA_NKT_PATHWAY
BIOCARTA_NO1_PATHWAY
BIOCARTA_NO2IL12_PATHWAY
BIOCARTA_NOS1_PATHWAY
BIOCARTA_NOTCH_PATHWAY
BIOCARTA_NPC_PATHWAY
BIOCARTA_NPP1_PATHWAY
BIOCARTA_NTHI_PATHWAY
BIOCARTA_NUCLEARRS_PATHWAY
BIOCARTA_P27_PATHWAY
BIOCARTA_P35ALZHEIMERS_PATHWAY
BIOCARTA_P38MAPK_PATHWAY
BIOCARTA_P53_PATHWAY
BIOCARTA_P53HYPOXIA_PATHWAY
BIOCARTA_PAR1_PATHWAY
BIOCARTA_PARKIN_PATHWAY
BIOCARTA_PCAF_PATHWAY
BIOCARTA_PDGF_PATHWAY
BIOCARTA_PDZS_PATHWAY
BIOCARTA_PELP1_PATHWAY
BIOCARTA_PEPI_PATHWAY
BIOCARTA_PGC1A_PATHWAY
BIOCARTA_PITX2_PATHWAY
BIOCARTA_PKC_PATHWAY
BIOCARTA_PLATELETAPP_PATHWAY
BIOCARTA_PLC_PATHWAY
BIOCARTA_PLCD_PATHWAY
BIOCARTA_PLCE_PATHWAY
BIOCARTA_PLK3_PATHWAY
BIOCARTA_PML_PATHWAY
BIOCARTA_PPARA_PATHWAY
BIOCARTA_PPARG_PATHWAY
BIOCARTA_PRC2_PATHWAY
BIOCARTA_PRION_PATHWAY
BIOCARTA_PS1_PATHWAY
BIOCARTA_PTC1_PATHWAY
BIOCARTA_PTDINS_PATHWAY
BIOCARTA_PTEN_PATHWAY
BIOCARTA_PYK2_PATHWAY
BIOCARTA_RAB_PATHWAY
BIOCARTA_RAC1_PATHWAY
BIOCARTA_RACC_PATHWAY
BIOCARTA_RACCYCD_PATHWAY
BIOCARTA_RAN_PATHWAY
BIOCARTA_RANBP2_PATHWAY
BIOCARTA_RANKL_PATHWAY
BIOCARTA_RANMS_PATHWAY
BIOCARTA_RARRXR_PATHWAY
BIOCARTA_RAS_PATHWAY
BIOCARTA_RB_PATHWAY
BIOCARTA_RECK_PATHWAY
BIOCARTA_REELIN_PATHWAY
BIOCARTA_RELA_PATHWAY
BIOCARTA_RHO_PATHWAY
BIOCARTA_RHODOPSIN_PATHWAY
BIOCARTA_RNA_PATHWAY
BIOCARTA_RNAPOL3_PATHWAY
BIOCARTA_S1P_PATHWAY
BIOCARTA_SALMONELLA_PATHWAY
BIOCARTA_SAM68_PATHWAY
BIOCARTA_SARS_PATHWAY
BIOCARTA_SET_PATHWAY
BIOCARTA_SHH_PATHWAY
BIOCARTA_SKP2E2F_PATHWAY
BIOCARTA_SLRP_PATHWAY
BIOCARTA_SM_PATHWAY
BIOCARTA_SODD_PATHWAY
BIOCARTA_SPPA_PATHWAY
BIOCARTA_SPRY_PATHWAY
BIOCARTA_SRCRPTP_PATHWAY
BIOCARTA_STAT3_PATHWAY
BIOCARTA_STATHMIN_PATHWAY
BIOCARTA_STEM_PATHWAY
BIOCARTA_STRESS_PATHWAY
BIOCARTA_SUMO_PATHWAY
BIOCARTA_TALL1_PATHWAY
BIOCARTA_TCAPOPTOSIS_PATHWAY
BIOCARTA_TCR_PATHWAY
BIOCARTA_TCRA_PATHWAY
BIOCARTA_TCYTOTOXIC_PATHWAY
BIOCARTA_TEL_PATHWAY
BIOCARTA_TERC_PATHWAY
BIOCARTA_TERT_PATHWAY
BIOCARTA_TFF_PATHWAY
BIOCARTA_TGFB_PATHWAY
BIOCARTA_TH1TH2_PATHWAY
BIOCARTA_THELPER_PATHWAY
BIOCARTA_TID_PATHWAY
BIOCARTA_TNFR1_PATHWAY
BIOCARTA_TNFR2_PATHWAY
BIOCARTA_TOB1_PATHWAY
BIOCARTA_TOLL_PATHWAY
BIOCARTA_TPO_PATHWAY
BIOCARTA_TRKA_PATHWAY
BIOCARTA_TSP1_PATHWAY
BIOCARTA_TUBBY_PATHWAY
BIOCARTA_UCALPAIN_PATHWAY
BIOCARTA_VDR_PATHWAY
BIOCARTA_VEGF_PATHWAY
BIOCARTA_VIP_PATHWAY
BIOCARTA_VITCB_PATHWAY
BIOCARTA_VOBESITY_PATHWAY
BIOCARTA_WNT_LRP6_PATHWAY
BIOCARTA_WNT_PATHWAY