By collection: |
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[about the MSigDB collections]
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H
(hallmark gene sets, 50 gene sets)
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C1
(positional gene sets, 278 gene sets)
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C2
(curated gene sets, 6290 gene sets)
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CGP
(chemical and genetic perturbations, 3368 gene sets)
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CP
(canonical pathways, 2922 gene sets)
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C3
(regulatory target gene sets, 3731 gene sets)
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MIR
(microRNA targets, 2598 gene sets)
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TFT
(all transcription factor targets, 1133 gene sets)
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TFT:GTRD
(GTRD transcription factor targets, 523 gene sets)
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TFT:TFT_Legacy
(legacy transcription factor targets, 610 gene sets)
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C4
(computational gene sets, 858 gene sets)
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CGN
(cancer gene neighborhoods, 427 gene sets)
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CM
(cancer modules, 431 gene sets)
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C5
(ontology gene sets, 14998 gene sets)
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GO
(Gene Ontology, 10185 gene sets)
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GO:BP
(GO biological process, 7481 gene sets)
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GO:CC
(GO cellular component, 996 gene sets)
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GO:MF
(GO molecular function, 1708 gene sets)
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HPO
(Human Phenotye Ontology, 4813 gene sets)
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C6
(oncogenic signature gene sets, 189 gene sets)
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C7
(immunologic signature gene sets, 5219 gene sets)
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IMMUNESIGDB
(ImmuneSigDB gene sets, 4872 gene sets)
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VAX
(vaccine response gene sets, 347 gene sets)
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C8
(cell type signature gene sets, 671 gene sets)
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