Browse Gene Sets

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[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 299 gene sets)
  • C2 (curated gene sets, 5529 gene sets)
    • CGP (chemical and genetic perturbations, 3297 gene sets)
    • CP (Canonical pathways, 2232 gene sets)
      • CP:BIOCARTA (BioCarta gene sets, 289 gene sets)
      • CP:KEGG (KEGG gene sets, 186 gene sets)
      • CP:PID (PID gene sets, 196 gene sets)
      • CP:REACTOME (Reactome gene sets, 1532 gene sets)
  • C3 (regulatory target gene sets, 3735 gene sets)
    • MIR (microRNA targets, 2598 gene sets)
    • TFT (All transcription factor targets, 1137 gene sets)
      • TFT:GTRD (GTRD transcription factor targets, 526 gene sets)
      • TFT:TFT_Legacy (Legacy transcription factor targets, 611 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (GO gene sets, 10192 gene sets)
    • BP (GO biological process, 7530 gene sets)
    • CC (GO cellular component, 999 gene sets)
    • MF (GO molecular function, 1663 gene sets)
  • C6 (oncogenic signatures, 189 gene sets)
  • C7 (immunologic signatures, 4872 gene sets)

Click on a gene set name to view its gene set page.

HALLMARK_ADIPOGENESIS
HALLMARK_ALLOGRAFT_REJECTION
HALLMARK_ANDROGEN_RESPONSE
HALLMARK_ANGIOGENESIS
HALLMARK_APICAL_JUNCTION
HALLMARK_APICAL_SURFACE
HALLMARK_APOPTOSIS
HALLMARK_BILE_ACID_METABOLISM
HALLMARK_CHOLESTEROL_HOMEOSTASIS
HALLMARK_COAGULATION
HALLMARK_COMPLEMENT
HALLMARK_DNA_REPAIR
HALLMARK_E2F_TARGETS
HALLMARK_EPITHELIAL_MESENCHYMAL_TRA
NSITION

HALLMARK_ESTROGEN_RESPONSE_EARLY
HALLMARK_ESTROGEN_RESPONSE_LATE
HALLMARK_FATTY_ACID_METABOLISM
HALLMARK_G2M_CHECKPOINT
HALLMARK_GLYCOLYSIS
HALLMARK_HEDGEHOG_SIGNALING
HALLMARK_HEME_METABOLISM
HALLMARK_HYPOXIA
HALLMARK_IL2_STAT5_SIGNALING
HALLMARK_IL6_JAK_STAT3_SIGNALING
HALLMARK_INFLAMMATORY_RESPONSE
HALLMARK_INTERFERON_ALPHA_RESPONSE
HALLMARK_INTERFERON_GAMMA_RESPONSE
HALLMARK_KRAS_SIGNALING_DN
HALLMARK_KRAS_SIGNALING_UP
HALLMARK_MITOTIC_SPINDLE
HALLMARK_MTORC1_SIGNALING
HALLMARK_MYC_TARGETS_V1
HALLMARK_MYC_TARGETS_V2
HALLMARK_MYOGENESIS
HALLMARK_NOTCH_SIGNALING
HALLMARK_OXIDATIVE_PHOSPHORYLATION
HALLMARK_P53_PATHWAY
HALLMARK_PANCREAS_BETA_CELLS
HALLMARK_PEROXISOME
HALLMARK_PI3K_AKT_MTOR_SIGNALING
HALLMARK_PROTEIN_SECRETION
HALLMARK_REACTIVE_OXYGEN_SPECIES_PA
THWAY

HALLMARK_SPERMATOGENESIS
HALLMARK_TGF_BETA_SIGNALING
HALLMARK_TNFA_SIGNALING_VIA_NFKB
HALLMARK_UNFOLDED_PROTEIN_RESPONSE
HALLMARK_UV_RESPONSE_DN
HALLMARK_UV_RESPONSE_UP
HALLMARK_WNT_BETA_CATENIN_SIGNALING
HALLMARK_XENOBIOTIC_METABOLISM