Browse Gene Sets

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[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 278 gene sets)
  • C2 (curated gene sets, 6290 gene sets)
    • CGP (chemical and genetic perturbations, 3368 gene sets)
    • CP (canonical pathways, 2922 gene sets)
  • C3 (regulatory target gene sets, 3731 gene sets)
    • MIR (microRNA targets, 2598 gene sets)
    • TFT (all transcription factor targets, 1133 gene sets)
      • TFT:GTRD (GTRD transcription factor targets, 523 gene sets)
      • TFT:TFT_Legacy (legacy transcription factor targets, 610 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (ontology gene sets, 14998 gene sets)
    • GO (Gene Ontology, 10185 gene sets)
      • GO:BP (GO biological process, 7481 gene sets)
      • GO:CC (GO cellular component, 996 gene sets)
      • GO:MF (GO molecular function, 1708 gene sets)
    • HPO (Human Phenotye Ontology, 4813 gene sets)
  • C6 (oncogenic signature gene sets, 189 gene sets)
  • C7 (immunologic signature gene sets, 5219 gene sets)
    • IMMUNESIGDB (ImmuneSigDB gene sets, 4872 gene sets)
    • VAX (vaccine response gene sets, 347 gene sets)
  • C8 (cell type signature gene sets, 671 gene sets)

Click on a gene set name to view its gene set page.

ADA2_TARGET_GENES
ADCYAP1_TARGET_GENES
ADNP_TARGET_GENES
AEBP2_TARGET_GENES
AHRR_TARGET_GENES
ALKBH3_TARGET_GENES
ALX4_TARGET_GENES
ARHGAP35_TARGET_GENES
ARID3B_TARGET_GENES
ARID5B_TARGET_GENES
ARNT2_TARGET_GENES
ASH1L_TARGET_GENES
ASXL2_TARGET_GENES
ATF5_TARGET_GENES
ATF6_TARGET_GENES
ATM_TARGET_GENES
ATOH8_TARGET_GENES
ATXN7L3_TARGET_GENES
AUTS2_TARGET_GENES
BACH2_TARGET_GENES
BAHD1_TARGET_GENES
BANP_TARGET_GENES
BARHL1_TARGET_GENES
BARX1_TARGET_GENES
BARX2_TARGET_GENES
BCL6B_TARGET_GENES
BDP1_TARGET_GENES
BPTF_TARGET_GENES
BRCA2_TARGET_GENES
BRF1_TARGET_GENES
BRF2_TARGET_GENES
CARM1_TARGET_GENES
CASP3_TARGET_GENES
CASP8AP2_TARGET_GENES
CAVIN1_TARGET_GENES
CBFA2T2_TARGET_GENES
CBX5_TARGET_GENES
CBX7_TARGET_GENES
CC2D1A_TARGET_GENES
CDC5L_TARGET_GENES
CDC73_TARGET_GENES
CDH4_TARGET_GENES
CDX1_TARGET_GENES
CEBPE_TARGET_GENES
CEBPZ_TARGET_GENES
CENPT_TARGET_GENES
CHAF1A_TARGET_GENES
CHAF1B_TARGET_GENES
CHAMP1_TARGET_GENES
CIC_TARGET_GENES
CIITA_TARGET_GENES
COBLL1_TARGET_GENES
CREB3_TARGET_GENES
CREB3L2_TARGET_GENES
CREB3L4_TARGET_GENES
CREBL2_TARGET_GENES
CSHL1_TARGET_GENES
CTR9_TARGET_GENES
CUX1_TARGET_GENES
DACH1_TARGET_GENES
DBP_TARGET_GENES
DICER1_TARGET_GENES
DIDO1_TARGET_GENES
DLX2_TARGET_GENES
DLX4_TARGET_GENES
DLX6_TARGET_GENES
DMRT1_TARGET_GENES
DNMT1_TARGET_GENES
DNMT3A_TARGET_GENES
DPPA3_TARGET_GENES
DROSHA_TARGET_GENES
DYRK1A_TARGET_GENES
E2F2_TARGET_GENES
E2F5_TARGET_GENES
EBNA1BP2_TARGET_GENES
EGFR_TARGET_GENES
ELF2_TARGET_GENES
ELF5_TARGET_GENES
EMX1_TARGET_GENES
EPC1_TARGET_GENES
ERCC8_TARGET_GENES
EWSR1_TARGET_GENES
F10_TARGET_GENES
F2RL1_TARGET_GENES
FEV_TARGET_GENES
FOXC1_TARGET_GENES
FOXD2_TARGET_GENES
FOXD3_TARGET_GENES
FOXE1_TARGET_GENES
FOXF1_TARGET_GENES
FOXF2_TARGET_GENES
FOXG1_TARGET_GENES
FOXH1_TARGET_GENES
FOXJ2_TARGET_GENES
FOXN3_TARGET_GENES
FOXO4_TARGET_GENES
FOXP2_TARGET_GENES
FOXQ1_TARGET_GENES
FOXR2_TARGET_GENES
FXR1_TARGET_GENES
GCM2_TARGET_GENES
GLI1_TARGET_GENES
GLI3_TARGET_GENES
GLI4_TARGET_GENES
GREB1_TARGET_GENES
GTF2A2_TARGET_GENES
GTF2E2_TARGET_GENES
GTF3A_TARGET_GENES
GTF3C1_TARGET_GENES
GUCY1B1_TARGET_GENES
H1_6_TARGET_GENES
HAND1_TARGET_GENES
HBZ_TARGET_GENES
HDAC4_TARGET_GENES
HDAC8_TARGET_GENES
HDGF_TARGET_GENES
HES2_TARGET_GENES
HES4_TARGET_GENES
HEY2_TARGET_GENES
HHEX_TARGET_GENES
HJURP_TARGET_GENES
HMBOX1_TARGET_GENES
HMCES_TARGET_GENES
HMG20B_TARGET_GENES
HMGA1_TARGET_GENES
HMGB1_TARGET_GENES
HMGB2_TARGET_GENES
HOXA10_TARGET_GENES
HOXA13_TARGET_GENES
HOXA1_TARGET_GENES
HOXA2_TARGET_GENES
HOXA7_TARGET_GENES
HOXB4_TARGET_GENES
HOXB6_TARGET_GENES
HOXB7_TARGET_GENES
HOXC11_TARGET_GENES
HOXC13_TARGET_GENES
HOXC6_TARGET_GENES
HOXD11_TARGET_GENES
HOXD1_TARGET_GENES
HSD17B8_TARGET_GENES
HSF2_TARGET_GENES
HSF4_TARGET_GENES
ID1_TARGET_GENES
ID2_TARGET_GENES
IGLV5_37_TARGET_GENES
ILK_TARGET_GENES
INSM2_TARGET_GENES
IRF5_TARGET_GENES
IRF9_TARGET_GENES
IRX2_TARGET_GENES
IRX3_TARGET_GENES
ISL1_TARGET_GENES
JDP2_TARGET_GENES
KAT2A_TARGET_GENES
KAT5_TARGET_GENES
KDM1B_TARGET_GENES
KDM5D_TARGET_GENES
KDM7A_TARGET_GENES
KLF14_TARGET_GENES
KLF7_TARGET_GENES
KMT2D_TARGET_GENES
LAMB3_TARGET_GENES
LAMTOR5_TARGET_GENES
LCORL_TARGET_GENES
LHX2_TARGET_GENES
LHX3_TARGET_GENES
LHX9_TARGET_GENES
LMNB2_TARGET_GENES
LMTK3_TARGET_GENES
LMX1B_TARGET_GENES
MAFG_TARGET_GENES
MAML1_TARGET_GENES
MAP2K1_TARGET_GENES
MAPK3_TARGET_GENES
MCM2_TARGET_GENES
MCM3_TARGET_GENES
MCM5_TARGET_GENES
MCRS1_TARGET_GENES
MDM2_TARGET_GENES
MED16_TARGET_GENES
MED25_TARGET_GENES
MEF2C_TARGET_GENES
MEF2D_TARGET_GENES
METHYLCYTOSINE_DIOXYGENASE_TET_UNIP
ROT_A0A023HHK9_UNREVIEWED_TARGET_GE
NES

METTL14_TARGET_GENES
MIER1_TARGET_GENES
MNX1_TARGET_GENES
MORC2_TARGET_GENES
MPHOSPH8_TARGET_GENES
MSX1_TARGET_GENES
MSX2_TARGET_GENES
MTHFD1_TARGET_GENES
MXD1_TARGET_GENES
MYBL1_TARGET_GENES
MYF6_TARGET_GENES
MYOCD_TARGET_GENES
MZF1_TARGET_GENES
NAB2_TARGET_GENES
NCOA2_TARGET_GENES
NCOA4_TARGET_GENES
NCOA6_TARGET_GENES
NEUROD2_TARGET_GENES
NEUROG3_TARGET_GENES
NFE2L1_TARGET_GENES
NFE2L3_TARGET_GENES
NFKBIA_TARGET_GENES
NFRKB_TARGET_GENES
NFXL1_TARGET_GENES
NKX2_2_TARGET_GENES
NKX2_3_TARGET_GENES
NKX2_5_TARGET_GENES
NKX2_8_TARGET_GENES
NKX6_1_TARGET_GENES
NME2_TARGET_GENES
NOTCH3_TARGET_GENES
NPAT_TARGET_GENES
NPM1_TARGET_GENES
NR0B1_TARGET_GENES
NR1D1_TARGET_GENES
NR1H4_TARGET_GENES
NR1I2_TARGET_GENES
NR2E3_TARGET_GENES
NR4A2_TARGET_GENES
NR5A1_TARGET_GENES
NUFIP1_TARGET_GENES
NUP153_TARGET_GENES
NUP214_TARGET_GENES
OVOL3_TARGET_GENES
PAF1_TARGET_GENES
PAX3_TARGET_GENES
PAX6_TARGET_GENES
PAX7_TARGET_GENES
PAX8_TARGET_GENES
PBRM1_TARGET_GENES
PBXIP1_TARGET_GENES
PCGF1_TARGET_GENES
PCGF2_TARGET_GENES
PCGF6_TARGET_GENES
PER1_TARGET_GENES
PGBD5_TARGET_GENES
PGM3_TARGET_GENES
PHB2_TARGET_GENES
PHF21A_TARGET_GENES
PHF2_TARGET_GENES
PIAS4_TARGET_GENES
PITX1_TARGET_GENES
POU2AF1_TARGET_GENES
PPARA_TARGET_GENES
PPARGC1A_TARGET_GENES
PRDM12_TARGET_GENES
PRDM4_TARGET_GENES
PRDM5_TARGET_GENES
PRKDC_TARGET_GENES
PRMT5_TARGET_GENES
PSIP1_TARGET_GENES
PSMB5_TARGET_GENES
PTPRA_TARGET_GENES
PTTG1_TARGET_GENES
RAG1_TARGET_GENES
RARB_TARGET_GENES
RAX2_TARGET_GENES
RBL1_TARGET_GENES
RBM15_TARGET_GENES
RBM17_TARGET_GENES
RBM34_TARGET_GENES
RBMX_TARGET_GENES
RFX7_TARGET_GENES
RLF_TARGET_GENES
RORA_TARGET_GENES
RPA1_TARGET_GENES
RUVBL1_TARGET_GENES
RUVBL2_TARGET_GENES
RYBP_TARGET_GENES
SAFB2_TARGET_GENES
SALL4_TARGET_GENES
SATB1_TARGET_GENES
SETBP1_TARGET_GENES
SETD1A_TARGET_GENES
SETD7_TARGET_GENES
SETX_TARGET_GENES
SFMBT1_TARGET_GENES
SIGMAR1_TARGET_GENES
SIPA1_TARGET_GENES
SIRT3_TARGET_GENES
SIX1_TARGET_GENES
SIX4_TARGET_GENES
SKIL_TARGET_GENES
SKP2_TARGET_GENES
SMARCA1_TARGET_GENES
SMCHD1_TARGET_GENES
SMN1_SMN2_TARGET_GENES
SNAI1_TARGET_GENES
SNAPC2_TARGET_GENES
SNAPC4_TARGET_GENES
SNIP1_TARGET_GENES
SNRNP70_TARGET_GENES
SOX10_TARGET_GENES
SOX11_TARGET_GENES
SOX15_TARGET_GENES
SOX3_TARGET_GENES
SQSTM1_TARGET_GENES
SRCAP_TARGET_GENES
SRPK1_TARGET_GENES
SRPK2_TARGET_GENES
SRSF9_TARGET_GENES
SS18_SSX1_FUSION_UNIPROT_Q8IZH1_UNR
EVIEWED_TARGET_GENES

STN1_TARGET_GENES
SUMO1_TARGET_GENES
SUPT16H_TARGET_GENES
SUPT20H_TARGET_GENES
SVIL_TARGET_GENES
SYNCRIP_TARGET_GENES
TAF9B_TARGET_GENES
TASOR_TARGET_GENES
TAZ_TARGET_GENES
TBPL1_TARGET_GENES
TBX1_TARGET_GENES
TBX3_TARGET_GENES
TCF7_TARGET_GENES
TCOF1_TARGET_GENES
TDRD3_TARGET_GENES
TEAD2_TARGET_GENES
TERF1_TARGET_GENES
TERF2_TARGET_GENES
TERT_TARGET_GENES
TET1_TARGET_GENES
TFAM_TARGET_GENES
TFCP2_TARGET_GENES
TFDP2_TARGET_GENES
TFEB_TARGET_GENES
THAP1_TARGET_GENES
THRA_TARGET_GENES
THRAP3_TARGET_GENES
TOP2B_TARGET_GENES
TOX4_TARGET_GENES
TP73_TARGET_GENES
TRIP13_TARGET_GENES
TSHZ1_TARGET_GENES
UBE2I_TARGET_GENES
UBN1_TARGET_GENES
UBP1_TARGET_GENES
VRTN_TARGET_GENES
WDHD1_TARGET_GENES
WIZ_TARGET_GENES
WRN_TARGET_GENES
WRNIP1_TARGET_GENES
XPO1_TARGET_GENES
YBX1_TARGET_GENES
YBX3_TARGET_GENES
ZA_UNIPROT_Q9UM89_UNREVIEWED_TARGET
_GENES

ZBED4_TARGET_GENES
ZBED5_TARGET_GENES
ZBTB12_TARGET_GENES
ZBTB18_TARGET_GENES
ZBTB1_TARGET_GENES
ZBTB24_TARGET_GENES
ZBTB44_TARGET_GENES
ZBTB49_TARGET_GENES
ZBTB5_TARGET_GENES
ZBTB7B_TARGET_GENES
ZC3H11A_TARGET_GENES
ZFHX3_TARGET_GENES
ZFP28_TARGET_GENES
ZFP36L1_TARGET_GENES
ZFP37_TARGET_GENES
ZFP3_TARGET_GENES
ZFP82_TARGET_GENES
ZFP91_TARGET_GENES
ZIM3_TARGET_GENES
ZMYM2_TARGET_GENES
ZMYND11_TARGET_GENES
ZNF101_TARGET_GENES
ZNF10_TARGET_GENES
ZNF112_TARGET_GENES
ZNF133_TARGET_GENES
ZNF134_TARGET_GENES
ZNF136_TARGET_GENES
ZNF140_TARGET_GENES
ZNF146_TARGET_GENES
ZNF157_TARGET_GENES
ZNF165_TARGET_GENES
ZNF169_TARGET_GENES
ZNF16_TARGET_GENES
ZNF175_TARGET_GENES
ZNF184_TARGET_GENES
ZNF197_TARGET_GENES
ZNF19_TARGET_GENES
ZNF202_TARGET_GENES
ZNF20_TARGET_GENES
ZNF211_TARGET_GENES
ZNF213_TARGET_GENES
ZNF214_TARGET_GENES
ZNF223_TARGET_GENES
ZNF224_TARGET_GENES
ZNF22_TARGET_GENES
ZNF236_TARGET_GENES
ZNF239_TARGET_GENES
ZNF23_TARGET_GENES
ZNF250_TARGET_GENES
ZNF257_TARGET_GENES
ZNF260_TARGET_GENES
ZNF26_TARGET_GENES
ZNF274_TARGET_GENES
ZNF282_TARGET_GENES
ZNF292_TARGET_GENES
ZNF2_TARGET_GENES
ZNF302_TARGET_GENES
ZNF30_TARGET_GENES
ZNF318_TARGET_GENES
ZNF322_TARGET_GENES
ZNF329_TARGET_GENES
ZNF331_TARGET_GENES
ZNF33A_TARGET_GENES
ZNF34_TARGET_GENES
ZNF350_TARGET_GENES
ZNF354A_TARGET_GENES
ZNF354B_TARGET_GENES
ZNF354C_TARGET_GENES
ZNF362_TARGET_GENES
ZNF37A_TARGET_GENES
ZNF391_TARGET_GENES
ZNF394_TARGET_GENES
ZNF404_TARGET_GENES
ZNF407_TARGET_GENES
ZNF410_TARGET_GENES
ZNF416_TARGET_GENES
ZNF418_TARGET_GENES
ZNF419_TARGET_GENES
ZNF41_TARGET_GENES
ZNF423_TARGET_GENES
ZNF426_TARGET_GENES
ZNF433_TARGET_GENES
ZNF436_TARGET_GENES
ZNF445_TARGET_GENES
ZNF449_TARGET_GENES
ZNF454_TARGET_GENES
ZNF486_TARGET_GENES
ZNF488_TARGET_GENES
ZNF490_TARGET_GENES
ZNF491_TARGET_GENES
ZNF501_TARGET_GENES
ZNF502_TARGET_GENES
ZNF507_TARGET_GENES
ZNF510_TARGET_GENES
ZNF512_TARGET_GENES
ZNF512B_TARGET_GENES
ZNF513_TARGET_GENES
ZNF514_TARGET_GENES
ZNF524_TARGET_GENES
ZNF528_TARGET_GENES
ZNF529_TARGET_GENES
ZNF530_TARGET_GENES
ZNF532_TARGET_GENES
ZNF547_TARGET_GENES
ZNF548_TARGET_GENES
ZNF549_TARGET_GENES
ZNF555_TARGET_GENES
ZNF558_TARGET_GENES
ZNF560_TARGET_GENES
ZNF561_TARGET_GENES
ZNF563_TARGET_GENES
ZNF577_TARGET_GENES
ZNF579_TARGET_GENES
ZNF581_TARGET_GENES
ZNF582_TARGET_GENES
ZNF584_TARGET_GENES
ZNF585B_TARGET_GENES
ZNF586_TARGET_GENES
ZNF589_TARGET_GENES
ZNF592_TARGET_GENES
ZNF595_TARGET_GENES
ZNF596_TARGET_GENES
ZNF597_TARGET_GENES
ZNF610_TARGET_GENES
ZNF618_TARGET_GENES
ZNF622_TARGET_GENES
ZNF623_TARGET_GENES
ZNF626_TARGET_GENES
ZNF654_TARGET_GENES
ZNF660_TARGET_GENES
ZNF664_TARGET_GENES
ZNF667_TARGET_GENES
ZNF669_TARGET_GENES
ZNF677_TARGET_GENES
ZNF680_TARGET_GENES
ZNF697_TARGET_GENES
ZNF704_TARGET_GENES
ZNF707_TARGET_GENES
ZNF708_TARGET_GENES
ZNF711_TARGET_GENES
ZNF740_TARGET_GENES
ZNF746_TARGET_GENES
ZNF766_TARGET_GENES
ZNF768_TARGET_GENES
ZNF774_TARGET_GENES
ZNF776_TARGET_GENES
ZNF777_TARGET_GENES
ZNF781_TARGET_GENES
ZNF784_TARGET_GENES
ZNF791_TARGET_GENES
ZNF7_TARGET_GENES
ZNF816_TARGET_GENES
ZNF830_TARGET_GENES
ZNF837_TARGET_GENES
ZNF843_TARGET_GENES
ZNF84_TARGET_GENES
ZNF85_TARGET_GENES
ZNF8_TARGET_GENES
ZNF92_TARGET_GENES
ZSCAN18_TARGET_GENES
ZSCAN21_TARGET_GENES
ZSCAN23_TARGET_GENES
ZSCAN26_TARGET_GENES
ZSCAN29_TARGET_GENES
ZSCAN2_TARGET_GENES
ZSCAN30_TARGET_GENES
ZSCAN31_TARGET_GENES
ZSCAN4_TARGET_GENES
ZSCAN5B_TARGET_GENES
ZSCAN5C_TARGET_GENES
ZSCAN5DP_TARGET_GENES
ZZZ3_TARGET_GENES