Browse Gene Sets

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By collection:

[about the MSigDB collections]

  • H (hallmark gene sets, 50 gene sets)
  • C1 (positional gene sets, 278 gene sets)
  • C2 (curated gene sets, 6290 gene sets)
    • CGP (chemical and genetic perturbations, 3368 gene sets)
    • CP (canonical pathways, 2922 gene sets)
  • C3 (regulatory target gene sets, 3731 gene sets)
    • MIR (microRNA targets, 2598 gene sets)
    • TFT (all transcription factor targets, 1133 gene sets)
      • TFT:GTRD (GTRD transcription factor targets, 523 gene sets)
      • TFT:TFT_Legacy (legacy transcription factor targets, 610 gene sets)
  • C4 (computational gene sets, 858 gene sets)
    • CGN (cancer gene neighborhoods, 427 gene sets)
    • CM (cancer modules, 431 gene sets)
  • C5 (ontology gene sets, 14998 gene sets)
    • GO (Gene Ontology, 10185 gene sets)
      • GO:BP (GO biological process, 7481 gene sets)
      • GO:CC (GO cellular component, 996 gene sets)
      • GO:MF (GO molecular function, 1708 gene sets)
    • HPO (Human Phenotye Ontology, 4813 gene sets)
  • C6 (oncogenic signature gene sets, 189 gene sets)
  • C7 (immunologic signature gene sets, 5219 gene sets)
    • IMMUNESIGDB (ImmuneSigDB gene sets, 4872 gene sets)
    • VAX (vaccine response gene sets, 347 gene sets)
  • C8 (cell type signature gene sets, 671 gene sets)

Gene sets starting with F

Click on a gene set name to view its gene set page.

F10_TARGET_GENES
F2RL1_TARGET_GENES
FAC1_01
FAELT_B_CLL_WITH_VH3_21_DN
FAELT_B_CLL_WITH_VH3_21_UP
FAELT_B_CLL_WITH_VH_REARRANGEMENTS_
DN

FAELT_B_CLL_WITH_VH_REARRANGEMENTS_
UP

FALVELLA_SMOKERS_WITH_LUNG_CANCER
FAN_EMBRYONIC_CTX_ASTROCYTE_1
FAN_EMBRYONIC_CTX_ASTROCYTE_2
FAN_EMBRYONIC_CTX_BIG_GROUPS_BRAIN_
ENDOTHELIAL

FAN_EMBRYONIC_CTX_BIG_GROUPS_BRAIN_
IMMUNE

FAN_EMBRYONIC_CTX_BIG_GROUPS_CAJAL_
RETZIUS

FAN_EMBRYONIC_CTX_BIG_GROUPS_EXCITA
TORY_NEURON

FAN_EMBRYONIC_CTX_BIG_GROUPS_GLIAL
FAN_EMBRYONIC_CTX_BIG_GROUPS_INHIBI
TORY

FAN_EMBRYONIC_CTX_BIG_GROUPS_MICROG
LIA

FAN_EMBRYONIC_CTX_BRAIN_B_CELL
FAN_EMBRYONIC_CTX_BRAIN_EFFECTOR_T_
CELL

FAN_EMBRYONIC_CTX_BRAIN_ENDOTHELIAL
_1

FAN_EMBRYONIC_CTX_BRAIN_ENDOTHELIAL
_2

FAN_EMBRYONIC_CTX_BRAIN_MYELOID
FAN_EMBRYONIC_CTX_BRAIN_NAIVE_LIKE_
T_CELL

FAN_EMBRYONIC_CTX_EX_1_EXCITATORY_N
EURON

FAN_EMBRYONIC_CTX_EX_2_EXCITATORY_N
EURON

FAN_EMBRYONIC_CTX_EX_4_EXCITATORY_N
EURON

FAN_EMBRYONIC_CTX_IN_1_INTERNEURON
FAN_EMBRYONIC_CTX_IN_2_INTERNEURON
FAN_EMBRYONIC_CTX_IN_3_INTERNEURON
FAN_EMBRYONIC_CTX_IN_4_INTERNEURON
FAN_EMBRYONIC_CTX_IN_5_INTERNEURON
FAN_EMBRYONIC_CTX_IN_6_INTERNEURON
FAN_EMBRYONIC_CTX_MICROGLIA_1
FAN_EMBRYONIC_CTX_MICROGLIA_2
FAN_EMBRYONIC_CTX_MICROGLIA_3
FAN_EMBRYONIC_CTX_NSC_1
FAN_EMBRYONIC_CTX_NSC_2
FAN_EMBRYONIC_CTX_OLIG
FAN_EMBRYONIC_CTX_OPC
FAN_OVARY_CL0_XBP1_SELK_HIGH_STROMA
L_CELL

FAN_OVARY_CL10_PUTATIVE_EARLY_ATRES
IA_GRANULOSA_CELL

FAN_OVARY_CL11_MURAL_GRANULOSA_CELL
FAN_OVARY_CL12_T_LYMPHOCYTE_NK_CELL
_2

FAN_OVARY_CL13_MONOCYTE_MACROPHAGE
FAN_OVARY_CL14_MATURE_SMOOTH_MUSCLE
_CELL

FAN_OVARY_CL15_SMALL_ANTRAL_FOLLICL
E_GRANULOSA_CELL

FAN_OVARY_CL16_LYMPHATIC_ENDOTHELIA
L_CELL

FAN_OVARY_CL17_PUTATIVE_APOPTOTIC_S
MOOTH_MUSCLE_CELL

FAN_OVARY_CL18_B_LYMPHOCYTE
FAN_OVARY_CL1_GPRC5A_TNFRS12A_HIGH_
SELECTABLE_FOLLICLE_STROMAL_CELL

FAN_OVARY_CL2_PUTATIVE_EARLY_ATRETI
C_FOLLICLE_THECAL_CELL_1

FAN_OVARY_CL3_MATURE_CUMULUS_GRANUL
OSA_CELL_1

FAN_OVARY_CL4_T_LYMPHOCYTE_NK_CELL_
1

FAN_OVARY_CL5_HEALTHY_SELECTABLE_FO
LLICLE_THECAL_CELL

FAN_OVARY_CL6_PUTATIVE_EARLY_ATRETI
C_FOLLICLE_THECAL_CELL_2

FAN_OVARY_CL7_ANGEIOGENIC_ENDOTHELI
AL_CELL

FAN_OVARY_CL8_MATURE_CUMULUS_GRANUL
OSA_CELL_2

FAN_OVARY_CL9_PUTATIVE_APOPTOTIC_EN
DOTHELIAL_CELL

FARDIN_HYPOXIA_11
FARDIN_HYPOXIA_9
FARMER_BREAST_CANCER_APOCRINE_VS_BA
SAL

FARMER_BREAST_CANCER_APOCRINE_VS_LU
MINAL

FARMER_BREAST_CANCER_BASAL_VS_LULMI
NAL

FARMER_BREAST_CANCER_CLUSTER_1
FARMER_BREAST_CANCER_CLUSTER_2
FARMER_BREAST_CANCER_CLUSTER_3
FARMER_BREAST_CANCER_CLUSTER_4
FARMER_BREAST_CANCER_CLUSTER_5
FARMER_BREAST_CANCER_CLUSTER_6
FARMER_BREAST_CANCER_CLUSTER_7
FARMER_BREAST_CANCER_CLUSTER_8
FATTY_ACID_OXIDATION
FERNANDEZ_BOUND_BY_MYC
FERRANDO_HOX11_NEIGHBORS
FERRANDO_LYL1_NEIGHBORS
FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_
DN

FERRANDO_T_ALL_WITH_MLL_ENL_FUSION_
UP

FERRANDO_TAL1_NEIGHBORS
FERRARI_RESPONSE_TO_FENRETINIDE_DN
FERRARI_RESPONSE_TO_FENRETINIDE_UP
FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS
_STABLE_DN

FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS
_STABLE_UP

FEV_TARGET_GENES
FEVR_CTNNB1_TARGETS_DN
FEVR_CTNNB1_TARGETS_UP
FIGUEROA_AML_METHYLATION_CLUSTER_1_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_1_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_2_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_2_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_3_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_3_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_4_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_4_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_5_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_5_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_6_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_6_
UP

FIGUEROA_AML_METHYLATION_CLUSTER_7_
DN

FIGUEROA_AML_METHYLATION_CLUSTER_7_
UP

FINAK_BREAST_CANCER_SDPP_SIGNATURE
FINETTI_BREAST_CANCER_KINOME_GREEN
FINETTI_BREAST_CANCER_KINOME_RED
FINETTI_BREAST_CANCERS_KINOME_BLUE
FINETTI_BREAST_CANCERS_KINOME_GRAY
FIRESTEIN_CTNNB1_PATHWAY
FIRESTEIN_CTNNB1_PATHWAY_AND_PROLIF
ERATION

FIRESTEIN_PROLIFERATION
FISCHER_BLOOD_PLASMA_RVSV_EBOV_AGE_
18_55YO_HIGH_DOSE_3DY_DN

FISCHER_DIRECT_P53_TARGETS_META_ANA
LYSIS

FISCHER_DREAM_TARGETS
FISCHER_G1_S_CELL_CYCLE
FISCHER_G2_M_CELL_CYCLE
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_O
K_VS_DONOR_DN

FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_O
K_VS_DONOR_UP

FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_R
EJECTED_VS_OK_DN

FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_R
EJECTED_VS_OK_UP

FLECHNER_PBL_KIDNEY_TRANSPLANT_OK_V
S_DONOR_DN

FLECHNER_PBL_KIDNEY_TRANSPLANT_OK_V
S_DONOR_UP

FLECHNER_PBL_KIDNEY_TRANSPLANT_REJE
CTED_VS_OK_DN

FLECHNER_PBL_KIDNEY_TRANSPLANT_REJE
CTED_VS_OK_UP

FLETCHER_PBMC_BCG_10W_INFANT_BCG_ST
IMULATED_VS_UNSTIMULATED_10W_DN

FLETCHER_PBMC_BCG_10W_INFANT_BCG_ST
IMULATED_VS_UNSTIMULATED_10W_UP

FLETCHER_PBMC_BCG_10W_INFANT_PPD_ST
IMULATED_VS_UNSTIMULATED_10W_DN

FLETCHER_PBMC_BCG_10W_INFANT_PPD_ST
IMULATED_VS_UNSTIMULATED_10W_UP

FLORIO_HUMAN_NEOCORTEX
FLORIO_NEOCORTEX_BASAL_RADIAL_GLIA_
DN

FLORIO_NEOCORTEX_BASAL_RADIAL_GLIA_
UP

FLOTHO_PEDIATRIC_ALL_THERAPY_RESPON
SE_DN

FLOTHO_PEDIATRIC_ALL_THERAPY_RESPON
SE_UP

FOCAL_ADHESION
FONTAINE_FOLLICULAR_THYROID_ADENOMA
_DN

FONTAINE_FOLLICULAR_THYROID_ADENOMA
_UP

FONTAINE_PAPILLARY_THYROID_CARCINOM
A_DN

FONTAINE_PAPILLARY_THYROID_CARCINOM
A_UP

FONTAINE_THYROID_TUMOR_UNCERTAIN_MA
LIGNANCY_DN

FONTAINE_THYROID_TUMOR_UNCERTAIN_MA
LIGNANCY_UP

FORTSCHEGGER_PHF8_TARGETS_DN
FORTSCHEGGER_PHF8_TARGETS_UP
FOSTER_KDM1A_TARGETS_DN
FOSTER_KDM1A_TARGETS_UP
FOSTER_TOLERANT_MACROPHAGE_DN
FOSTER_TOLERANT_MACROPHAGE_UP
FOURATI_BLOOD_TWINRIX_AGE_25_83YO_R
ESPONDERS_VS_POOR_RESPONDERS_0DY_DN

FOURATI_BLOOD_TWINRIX_AGE_25_83YO_R
ESPONDERS_VS_POOR_RESPONDERS_0DY_UP

FOURATI_BLOOD_TWINRIX_AGE_65_81Y0_R
ESPONDERS_VS_POOR_RESPONDERS_TRAINI
NG_SET_0DY_NETWORK_INFERENCE_UP

FOURATI_BLOOD_TWINRIX_AGE_65_81YO_R
ESPONDERS_VS_POOR_RESPONDERS_TRAINI
NG_SET_0DY_NETWORK_INFERENCE_DN

FOURATI_BLOOD_TWINRIX_AGE_65_83YO_P
OOR_RESPONDERS_VS_RESPONDERS_0DY_NE
TWORK_INFERENCE_UP

FOURNIER_ACINAR_DEVELOPMENT_EARLY_D
N

FOURNIER_ACINAR_DEVELOPMENT_EARLY_U
P

FOURNIER_ACINAR_DEVELOPMENT_LATE_2
FOURNIER_ACINAR_DEVELOPMENT_LATE_DN
FOURNIER_ACINAR_DEVELOPMENT_LATE_UP
FOX_Q2
FOXC1_TARGET_GENES
FOXD2_TARGET_GENES
FOXD3_01
FOXD3_TARGET_GENES
FOXE1_TARGET_GENES
FOXF1_TARGET_GENES
FOXF2_TARGET_GENES
FOXG1_TARGET_GENES
FOXH1_TARGET_GENES
FOXJ2_01
FOXJ2_02
FOXJ2_TARGET_GENES
FOXM1_01
FOXN3_TARGET_GENES
FOXO1_01
FOXO1_02
FOXO3_01
FOXO4_01
FOXO4_02
FOXO4_TARGET_GENES
FOXP2_TARGET_GENES
FOXQ1_TARGET_GENES
FOXR2_TARGET_GENES
FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_0DY_NEGATIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_0DY_POSITIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_14DY_NEGATIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_14DY_POSITIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_1DY_NEGATIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_1DY_POSITIVE

FRANCO_BLOOD_SANOFI_PASTEUR_SA_INAC
TIVATED_INFLUENZA_VACCINE_CORRELATE
D_WITH_ANTIBODY_RESPONSE_AGE_18_40Y
O_3DY_POSITIVE

FRASOR_RESPONSE_TO_ESTRADIOL_DN
FRASOR_RESPONSE_TO_ESTRADIOL_UP
FRASOR_RESPONSE_TO_SERM_OR_FULVESTR
ANT_DN

FRASOR_RESPONSE_TO_SERM_OR_FULVESTR
ANT_UP

FRASOR_TAMOXIFEN_RESPONSE_DN
FRASOR_TAMOXIFEN_RESPONSE_UP
FREAC2_01
FREAC3_01
FREAC4_01
FREAC7_01
FREDERICK_PRKCI_TARGETS
FRIDMAN_IMMORTALIZATION_DN
FRIDMAN_SENESCENCE_DN
FRIDMAN_SENESCENCE_UP
FU_INTERACT_WITH_ALKBH8
FUJII_YBX1_TARGETS_DN
FUJII_YBX1_TARGETS_UP
FUJIWARA_PARK2_HEPATOCYTE_PROLIFERA
TION_DN

FUJIWARA_PARK2_HEPATOCYTE_PROLIFERA
TION_UP

FUJIWARA_PARK2_IN_LIVER_CANCER_DN
FUJIWARA_PARK2_IN_LIVER_CANCER_UP
FUKUSHIMA_TNFSF11_TARGETS
FULCHER_INFLAMMATORY_RESPONSE_LECTI
N_VS_LPS_DN

FULCHER_INFLAMMATORY_RESPONSE_LECTI
N_VS_LPS_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_18HR_DN

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_18HR_TO_336HR_SUSTAIN
ED_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_18HR_TO_48HR_EARLY_DN

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_18HR_TO_48HR_EARLY_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_18HR_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_192HR_DN

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_192HR_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_336HR_DN

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_336HR_UP

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_48HR_DN

FULLER_PBMC_F_TULARENSIS_VACCINE_LV
S_AGE_22_54YO_48HR_UP

FUNG_IL2_SIGNALING_1
FUNG_IL2_SIGNALING_2
FUNG_IL2_TARGETS_WITH_STAT5_BINDING
_SITES

FUNG_IL2_TARGETS_WITH_STAT5_BINDING
_SITES_T1

FURUKAWA_DUSP6_TARGETS_PCI35_DN
FURUKAWA_DUSP6_TARGETS_PCI35_UP
FXR1_TARGET_GENES
FXR_IR1_Q6
FXR_Q3