Table: Gene sets enriched in phenotype WT (17 samples) [plain text format]

	GS	GS DESC	SIZE	ES	NES	NOM p-val	FDR q-val	FWER p-val
1	hsp27Pathway	Details ...	15	0.78	2.18	0.000	0.003	0.004
2	p53hypoxiaPathway	Details ...	20	0.68	2.08	0.000	0.009	0.013
3	p53Pathway	Details ...	16	0.75	2.06	0.000	0.009	0.018
4	P53_UP	Details ...	40	0.60	1.88	0.000	0.065	0.195
5	radiation_sensitivity	Details ...	26	0.57	1.83	0.002	0.088	0.296
6	ck1Pathway	Details ...	15	0.54	1.63	0.015	0.449	0.835
7	inflamPathway	Details ...	28	0.54	1.55	0.049	0.701	0.955
8	no2il12Pathway	Details ...	17	0.63	1.52	0.049	0.776	0.975
9	badPathway	Details ...	21	0.47	1.51	0.056	0.710	0.977
10	lairPathway	Details ...	15	0.57	1.50	0.057	0.709	0.986
11	chemicalPathway	Details ...	21	0.46	1.49	0.045	0.692	0.989
12	GPCRs_Class_A_Rhodopsin-like	Details ...	111	0.43	1.47	0.062	0.692	0.991
13	cytokinePathway	Details ...	21	0.54	1.47	0.095	0.643	0.991
14	p53_signalling	Details ...	87	0.34	1.47	0.028	0.614	0.994
15	MAP00561_Glycerolipid_metabolism	Details ...	43	0.42	1.42	0.073	0.752	0.998
16	ST_Interleukin_4_Pathway	Details ...	24	0.40	1.34	0.100	1.000	1.000
17	HTERT_DOWN	Details ...	64	0.34	1.32	0.111	1.000	1.000
18	MAP00195_Photosynthesis	Details ...	16	0.56	1.31	0.229	1.000	1.000
19	ST_Wnt_Ca2_cyclic_GMP_Pathway	Details ...	19	0.45	1.29	0.165	1.000	1.000
20	ca_nf_at_signalling	Details ...	95	0.33	1.28	0.134	1.000	1.000
21	nktPathway		27	0.43	1.28	0.189	1.000	1.000
22	cell_adhesion_receptor_activity		29	0.40	1.27	0.147	1.000	1.000
23	atmPathway		19	0.43	1.25	0.218	1.000	1.000
24	no1Pathway		28	0.36	1.24	0.176	1.000	1.000
25	GPCRs_Class_B_Secretin-like		22	0.42	1.24	0.195	1.000	1.000
26	DNA_DAMAGE_SIGNALLING		90	0.32	1.24	0.223	1.000	1.000
27	Inflammatory_Response_Pathway		27	0.43	1.23	0.215	1.000	1.000
28	calcineurinPathway		18	0.41	1.23	0.221	1.000	1.000
29	drug_resistance_and_metabolism		95	0.27	1.23	0.128	0.995	1.000
30	MAP00193_ATP_synthesis		15	0.53	1.22	0.311	0.998	1.000
31	MAP03070_Type_III_secretion_system		15	0.53	1.22	0.311	0.966	1.000
32	dcPathway		19	0.46	1.21	0.255	0.969	1.000
33	MAP00052_Galactose_metabolism		22	0.40	1.21	0.220	0.949	1.000
34	th1th2Pathway		18	0.41	1.17	0.269	1.000	1.000
35	stemPathway		15	0.47	1.16	0.305	1.000	1.000
36	SIG_IL4RECEPTOR_IN_B_LYPHOCYTES		26	0.34	1.14	0.298	1.000	1.000
37	cell_cycle_regulator		23	0.39	1.13	0.331	1.000	1.000
38	MAP00562_Inositol_phosphate_metabolism		18	0.37	1.13	0.310	1.000	1.000
39	Eicosanoid_Synthesis		15	0.41	1.13	0.292	1.000	1.000
40	MAP00230_Purine_metabolism		80	0.29	1.12	0.284	1.000	1.000
41	CBF_LEUKEMIA_DOWNING_AML		56	0.32	1.12	0.297	1.000	1.000
42	GNF_FEMALE_GENES		77	0.30	1.12	0.311	1.000	1.000
43	ctlPathway		15	0.55	1.11	0.444	1.000	1.000
44	crebPathway		25	0.34	1.11	0.319	1.000	1.000
45	Il12Pathway		23	0.41	1.11	0.401	0.997	1.000
46	mitochondriaPathway		19	0.37	1.09	0.355	1.000	1.000
47	il1rPathway		29	0.32	1.08	0.339	1.000	1.000
48	MAP00860_Porphyrin_and_chlorophyll_metabolism		17	0.41	1.08	0.363	1.000	1.000
49	vipPathway		25	0.32	1.08	0.322	1.000	1.000
50	GLYCOL		20	0.37	1.08	0.382	0.994	1.000
51	MAP00020_Citrate_cycle_TCA_cycle		18	0.41	1.08	0.382	0.975	1.000
52	ceramidePathway		22	0.32	1.07	0.370	0.987	1.000
53	mprPathway		22	0.34	1.07	0.363	0.970	1.000
54	intrinsicPathway		22	0.39	1.07	0.381	0.970	1.000
55	MAP00500_Starch_and_sucrose_metabolism		20	0.37	1.06	0.389	0.954	1.000
56	tidPathway		18	0.34	1.05	0.385	0.972	1.000
57	MAP00120_Bile_acid_biosynthesis		21	0.37	1.05	0.398	0.961	1.000
58	PROLIF_GENES		358	0.21	1.05	0.334	0.950	1.000
59	CR_DEATH		70	0.27	1.05	0.391	0.938	1.000
60	cell_adhesion_molecule_activity		95	0.26	1.04	0.392	0.948	1.000
61	g1Pathway		26	0.31	1.04	0.386	0.943	1.000
62	nthiPathway		21	0.34	1.03	0.410	0.950	1.000
63	MAP00030_Pentose_phosphate_pathway		15	0.37	1.02	0.441	0.957	1.000
64	chrebpPathway		17	0.35	1.02	0.425	0.955	1.000
65	ucalpainPathway		16	0.39	1.02	0.439	0.944	1.000
66	MAP00350_Tyrosine_metabolism		28	0.33	1.02	0.446	0.931	1.000
67	g2Pathway		23	0.34	1.01	0.455	0.927	1.000
68	bcl2family_and_reg_network		23	0.30	1.01	0.461	0.919	1.000
69	GLUCO		31	0.30	1.00	0.441	0.917	1.000
70	MAP00590_Prostaglandin_and_leukotriene_metabolism		17	0.36	1.00	0.438	0.907	1.000
71	rarrxrPathway		15	0.36	0.99	0.474	0.936	1.000
72	FA		21	0.33	0.98	0.497	0.956	1.000
73	etsPathway		16	0.34	0.98	0.493	0.943	1.000
74	cell_adhesion		167	0.25	0.98	0.479	0.931	1.000
75	electron_transporter_activity		108	0.25	0.97	0.502	0.938	1.000
76	S1P_Signaling		20	0.31	0.97	0.521	0.929	1.000
77	amiPathway		22	0.40	0.96	0.533	0.928	1.000
78	cskPathway		22	0.40	0.96	0.533	0.916	1.000
79	il17Pathway		17	0.43	0.96	0.563	0.913	1.000
80	Matrix_Metalloproteinases		22	0.34	0.96	0.528	0.906	1.000
81	cell_surface_receptor_linked_signal_transduction		123	0.24	0.96	0.539	0.900	1.000
82	il2rbPathway		36	0.29	0.95	0.543	0.894	1.000
83	CR_IMMUNE_FUNCTION		50	0.28	0.95	0.521	0.884	1.000
84	raccycdPathway		22	0.28	0.95	0.530	0.890	1.000
85	ptdinsPathway		20	0.31	0.94	0.539	0.890	1.000
86	nos1Pathway		21	0.29	0.94	0.558	0.886	1.000
87	ANDROGEN_GENES_FROM_NETAFFX		53	0.25	0.94	0.552	0.880	1.000
88	GO_0005739		144	0.24	0.94	0.514	0.870	1.000
89	electron_transport		62	0.25	0.94	0.550	0.867	1.000
90	ST_Fas_Signaling_Pathway		56	0.24	0.93	0.544	0.871	1.000
91	ANTI_CD44_UP		23	0.29	0.92	0.573	0.892	1.000
92	MAP00190_Oxidative_phosphorylation		41	0.31	0.91	0.574	0.896	1.000
93	cell_growth_and_or_maintenance		55	0.25	0.91	0.570	0.891	1.000
94	INSULIN_2F_DOWN		27	0.27	0.90	0.607	0.897	1.000
95	rhoPathway		30	0.27	0.90	0.586	0.893	1.000
96	FRASOR_ER_UP		31	0.29	0.90	0.592	0.889	1.000
97	tob1Pathway		18	0.37	0.89	0.606	0.890	1.000
98	INS		24	0.28	0.88	0.616	0.902	1.000
99	ADULT_LIVER_vs_FETAL_LIVER_GNF2		61	0.26	0.87	0.650	0.912	1.000
100	ST_GRANULE_CELL_SURVIVAL_PATHWAY		25	0.27	0.87	0.652	0.903	1.000
101	telPathway		18	0.30	0.87	0.618	0.902	1.000
102	MAP00380_Tryptophan_metabolism		42	0.25	0.86	0.654	0.908	1.000
103	MAP00071_Fatty_acid_metabolism		43	0.25	0.86	0.651	0.901	1.000
104	MAP00620_Pyruvate_metabolism		30	0.26	0.86	0.643	0.901	1.000
105	mcalpainPathway		23	0.29	0.85	0.665	0.901	1.000
106	actinYPathway		18	0.29	0.85	0.647	0.898	1.000
107	AR_MOUSE_PLUS_TESTO_FROM_NETAFFX		50	0.23	0.84	0.713	0.918	1.000
108	cell_proliferation		200	0.17	0.83	0.870	0.925	1.000
109	SA_CASPASE_CASCADE		17	0.32	0.82	0.678	0.924	1.000
110	ctla4Pathway		19	0.38	0.82	0.679	0.923	1.000
111	MAP00010_Glycolysis_Gluconeogenesis		49	0.22	0.82	0.752	0.920	1.000
112	ST_Ga12_Pathway		21	0.27	0.81	0.734	0.926	1.000
113	MAP00650_Butanoate_metabolism		19	0.26	0.81	0.705	0.919	1.000
114	CR_TRANSCRIPTION_FACTORS		67	0.21	0.81	0.806	0.912	1.000
115	cellcyclePathway		23	0.27	0.78	0.729	0.949	1.000
116	GO_ROS		23	0.24	0.77	0.806	0.959	1.000
117	MAP00910_Nitrogen_metabolism		19	0.26	0.77	0.776	0.962	1.000
118	MAP00360_Phenylalanine_metabolism		16	0.29	0.77	0.745	0.954	1.000
119	pparaPathway		49	0.20	0.76	0.883	0.949	1.000
120	SA_MMP_CYTOKINE_CONNECTION		15	0.29	0.76	0.790	0.947	1.000
121	HOX_LIST_JP		42	0.22	0.75	0.804	0.957	1.000
122	EMT_UP		53	0.25	0.74	0.769	0.956	1.000
123	mitochondr		330	0.18	0.73	0.788	0.966	1.000
124	CR_CAM		89	0.19	0.73	0.928	0.959	1.000
125	MAP00640_Propanoate_metabolism		19	0.23	0.73	0.820	0.953	1.000
126	ST_G_alpha_i_Pathway_		34	0.20	0.73	0.887	0.949	1.000
127	cardiacegfPathway		16	0.24	0.69	0.892	0.983	1.000
128	AR_ORTHOS_MAPPED_TO_U133_VIA_NETAFFX		38	0.20	0.69	0.915	0.978	1.000
129	AR_MOUSE		38	0.20	0.69	0.915	0.970	1.000
130	LEU_UP		114	0.17	0.69	0.921	0.969	1.000
131	shh_lisa		17	0.22	0.68	0.877	0.966	1.000
132	human_mitoDB_6_2002		326	0.17	0.68	0.836	0.959	1.000
133	igf1mtorPathway		19	0.22	0.67	0.874	0.965	1.000
134	TGF_Beta_Signaling_Pathway		34	0.20	0.66	0.914	0.968	1.000
135	KRAS_TOP100_CONTROL		56	0.17	0.65	0.978	0.970	1.000
136	CR_REPAIR		39	0.21	0.63	0.833	0.977	1.000
137	MAP00710_Carbon_fixation		16	0.21	0.63	0.940	0.974	1.000
138	Krebs-TCA_Cycle		25	0.22	0.62	0.898	0.973	1.000
139	ST_T_Cell_Signal_Transduction		39	0.20	0.59	0.889	0.983	1.000
140	SIG_BCR_Signaling_Pathway		44	0.15	0.58	0.996	0.979	1.000
141	KRAS_TOP100_KNOCKDOWN		72	0.20	0.58	0.905	0.976	1.000
142	MAP00330_Arginine_and_proline_metabolism		38	0.17	0.57	0.969	0.969	1.000
143	VOXPHOS		66	0.16	0.47	0.943	0.992	1.000